A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID: PR0115  PDB ID: 1VBY 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
119BB_A116G117:C130U167_BB1.653-1.7653.103-4.1584.35342.533-2.8-2.632.7525.9655.69742.937
110BB_A143C144:G161G162_BB0.725-1.0932.895-8.37510.17433.791-2.925-2.1272.24716.73413.77636.2
112BB_A145C146:G159U160_BB-0.124-1.3143.253-2.6962.13333.158-2.639-0.2253.1653.7264.70833.331
116BB_C113C114:G169G170_BB-0.234-1.8743.33-9.0317.61938.719-3.548-0.6522.90611.17913.2540.415
117BB_C114C115:G168G169_BB-0.882-2.3522.7194.9191.84330.771-4.6492.3782.4113.441-9.18531.205
118BB_C115A116:U167G168_BB-0.492-1.6173.2012.3865.80423.209-5.5881.8832.6614.098-5.79624.031
121BB_C118C119:G128G129_BB-0.481-1.6653.328-0.1321.75835.19-3.0130.7753.2452.9060.21935.233
12BB_C132C133:G105G106_BB0.426-2.142.995-1.56511.74128.805-5.766-1.0311.96722.442.99231.098
13BB_C133G134:C104G105_BB0.002-2.0383.1513.9221.04926.856-4.5920.9353.042.243-8.38227.155
16BB_C136U137:G101G102_BB0.521-1.4463.1764.54-1.35445.833-1.733-0.2823.25-1.733-5.81246.064
111BB_C144A145:U160G161_BB0.061-1.4053.1673.04910.10132.576-3.8370.3342.62217.445-5.26734.198
113BB_C146C147:G158G159_BB-0.085-1.8783.365-5.5974.90833.939-3.893-0.7073.0478.2849.44834.722
114BB_G111U112:A171C172_BB-1.184-1.4293.116-1.7915.03728.678-3.8551.992.89510.0583.57629.161
120BB_G117C118:G129C130_BB0.223-1.5123.416-0.7191.24937.754-2.502-0.443.3611.9291.1137.781
11BB_G131C132:G106C107_BB-0.583-1.7343.36-2.3885.41132.2-4.0030.6263.079.6544.2632.725
14BB_G134G135:C103C104_BB-0.132-1.7163.5351.7179.46926.596-5.6990.6662.75819.78-3.58728.254
15BB_G135C136:G102C103_BB-0.518-2.2863.138-8.6276.13424.807-6.33-0.8892.54513.51919.01526.939
18BB_G138G139:C121C122_BB-0.503-1.7173.499-4.1156.60234.844-3.790.2063.16810.8586.76835.675
19BB_G139A143:G162C121_BB-5.633-2.1674.21332.297-3.73788.802-1.4144.522.582-2.601-22.47493.388
115BB_U112C113:G170A171_BB0.941-1.5443.067-1.039-3.70730.797-2.202-1.9513.194-6.9461.94731.031
17BB_U137G138:C122G101_BB-2.658-2.6373.711-2.20910.4674.268-23.71611.016-0.50866.83914.10411.515

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.