A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID: PR0120  PDB ID: 1VC6 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
120B_A116:U167_B-0.169-0.1240.265.17-3.2087.053
110B_A143:G162_B-0.1811.332-0.377-1.327-21.466-3.607
112B_A145:U160_B0.264-0.2610.0170.973-15.0362.962
117B_C113:G170_B-0.368-0.2720.00512.312-8.142-2.198
118B_C114:G169_B0.299-0.3390.375-3.095-6.92.096
119B_C115:G168_B0.032-0.1630.269-3.277-3.506-3.075
122B_C118:G129_B-0.3-0.257-0.0470.331-26.1173.976
123B_C119:G128_B0.329-0.6410.784-17.162-10.264-12.091
12B_C132:G106_B0.573-0.3960.357-8.633-8.0693.835
13B_C133:G105_B0.416-0.3740.673-7.607-6.5391.021
16B_C136:G102_B0.587-0.409-0.133.343-7.627-1.562
111B_C144:G161_B0.313-0.0610.3642.71-13.676-0.011
113B_C146:G159_B-0.047-0.137-0.1994.717-11.9285.286
114B_C147:G158_B0.073-0.333-0.0170.654-1.964-3.015
115B_G111:C172_B-0.040.1310.533-5.389-9.5656.285
121B_G117:C130_B-0.181-0.0750.4467.096-15.7842.601
11B_G131:C107_B-0.687-0.215-0.115-6.68-7.1713.352
14B_G134:C104_B-0.853-0.251-0.0462.1597.4637.421
15B_G135:C103_B-0.575-0.092-0.893-9.921-9.8695.911
18B_G138:C122_B0.475-0.324-0.64-7.985-8.5150.661
19B_G139:C121_B0.113-0.23-0.151-17.681-18.509-4.491
116B_U112:A171_B0.021-0.4360.1654.781-11.289-3.958
17B_U137:G101_B3.125-0.441-0.4191.43-6.033-1.777
124B_U155:C157_B-4.97-0.7770.9781.7154.18946.054

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.