A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 21-Sep-2022 number of released structures: 12282
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NDB ID: ZDF040  PDB ID: 1VTU 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11A_DC1:DG12_B-0.749-0.21-0.2243.946-13.761.134
13A_DC3:DG10_B-0.583-0.407-0.2276.38-3.9880.586
15A_DC5:DG8_B-0.385-0.3290.12-1.889-6.0890.083
12A_DG2:DC11_B0.412-0.371-0.144-0.93-3.6354.462
14A_DG4:DC9_B0.127-0.251-0.066-8.464-3.7971.501
16A_DG6:DC7_B0.143-0.160.016-3.862-5.197-1.627

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.