1WBB: Base Pair Morphology Step Parameters

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NDB ID: PD0832 PDB ID: 1WBB

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	1	EE_DA1DG2:DC29DT30_FF	-1.052	-0.142	3.272	-13.113	16.117	36.766	-1.957	0.035	3.14	23.403	19.041	42.054
1	8	EE_DA8DG9:DT22DT23_FF	-2.094	0.922	6.865	13.045	62.879	30.331	-4.62	2.943	3.544	65.965	-13.685	70.321
1	12	EE_DA12DC13:DG18DT19_FF	0.644	-0.857	3.089	-5.628	1.934	39.06	-1.479	-1.566	2.928	2.872	8.359	39.494
1	15	EE_DA15DG16:DC15DT16_FF	0.123	-0.224	3.361	-10.416	0.126	28.586	-0.454	-2.373	3.124	0.246	20.264	30.387
1	3	EE_DC3DT4:DA27DG28_FF	-0.461	-0.084	3.284	0.616	4.09	34.749	-0.757	0.859	3.245	6.818	-1.027	34.987
1	6	EE_DC6DC7:DG24DG25_FF	1.083	-0.087	3.031	5.322	0.333	36.109	-0.183	-1.031	3.153	0.534	-8.529	36.488
1	7	EE_DC7DA8:DT23DG24_FF	-0.096	0.828	3.178	2.637	3.492	35.47	0.853	0.53	3.227	5.706	-4.308	35.731
1	11	EE_DC11DA12:DT19DG20_FF	-0.852	-0.105	3.497	1.543	11.867	27.743	-2.761	1.969	3.138	23.416	-3.044	30.167
1	13	EE_DC13DC14:DG17DG18_FF	0.529	-0.202	3.723	6.101	4.16	33.372	-1.101	0.209	3.708	7.135	-10.465	34.156
1	14	EE_DC14DA15:DT16DG17_FF	-0.717	0.644	3.348	0.171	13.375	34.918	-0.872	1.144	3.361	21.346	-0.273	37.318
1	2	EE_DG2DC3:DG28DC29_FF	-0.634	-0.306	3.578	-1.986	-0.57	36.005	-0.405	0.714	3.611	-0.922	3.21	36.062
1	5	EE_DG5DC6:DG25DC26_FF	-1.163	0.441	3.079	-10.126	1.017	35.848	0.556	0.487	3.288	1.613	16.057	37.219
1	9	EE_DG9DG10:DC21DT22_FF	2.776	1.248	2.827	-11.845	2.997	6.45	3.938	-16.503	-0.785	15.273	60.371	13.811
1	10	EE_DG10DC11:DG20DC21_FF	0.948	-0.08	3.077	4.907	7.995	27.798	-1.822	-0.853	3.055	16.073	-9.865	29.308
1	16	EE_DG16DT17:DA14DC15_FF	0.046	-1.271	2.792	9.47	-0.251	37.068	-1.914	0.952	2.73	-0.388	-14.605	38.218
1	4	EE_DT4DG5:DC26DA27_FF	0.859	1.011	3.462	7.221	-0.106	37.373	1.565	-0.323	3.558	-0.163	-11.141	38.04

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.