1WV5: Base Pair Morphology Parameters

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As of 31-May-2023 number of released structures: 12820

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NDB ID: AD0035 PDB ID: 1WV5

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	6	A_2BT6:DA15_B	-0.163	-0.315	-0.041	-0.509	-18.164	0.313
1	5	A_DA5:2BT16_B	0.31	-0.287	0.136	-0.489	-15.04	-0.444
1	7	A_DA7:DT14_B	0.227	-0.161	-0.051	0.076	-16.118	6.435
1	2	A_DC2:DG19_B	0.37	-0.293	0.215	7.067	-15.574	2.751
1	8	A_DC8:DG13_B	-0.155	-0.131	-0.14	7.828	-12.733	2.95
1	10	A_DC10:DG11_B	0.171	-0.098	-0.109	15.146	-7.042	0.284
1	1	A_DG1:DC20_B	-0.313	0.061	0.388	4.162	-5.889	3.975
1	3	A_DG3:DC18_B	-0.399	-0.128	0.002	-7.348	-15.271	-0.481
1	9	A_DG9:DC12_B	-0.093	-0.176	-0.043	2.427	-7.499	3.377
1	4	A_DT4:DA17_B	-0.296	-0.198	0.021	-0.517	-9.01	-4.331

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.