1WZ2: Base Pair Morphology Parameters

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As of 15-Mar-2023 number of released structures: 12686

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NDB ID: PR0145 PDB ID: 1WZ2

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	26	C_A934:U942_C	0.288	0.089	-0.255	5.651	-10.401	-6.961
1	2	C_C902:G983_C	-0.022	-0.092	-0.531	9.772	-11.844	-6.775
1	15	C_C922:G915_C	-0.675	4.749	0.362	-0.419	-5.784	98.504
1	20	C_C928:G910_C	0.137	0.055	-0.608	-4.938	-15.341	5.733
1	28	C_C948:G957_C	0.307	0.053	-0.016	-2.389	-3.599	-2.839
1	29	C_C949:G956_C	-0.101	-0.133	-0.226	2.279	-10.956	-3.52
1	30	C_C950:G955_C	0.366	-0.244	-0.769	-3.349	-2.642	1.934
1	8	C_C961:G977_C	0.155	0.024	-0.266	12.146	-6.529	-1.797
1	1	C_G901:C984_C	-0.27	0.023	0.153	-7.504	4.043	-1.08
1	3	C_G903:C982_C	-0.173	-0.174	-1.001	-10.859	-27.897	14.26
1	4	C_G904:C981_C	-0.118	-0.107	-0.086	-6.98	16.097	-1.161
1	5	C_G905:C980_C	0.058	-0.231	-0.88	6.295	0.502	0.963
1	6	C_G906:C979_C	-0.111	-0.091	0.155	-17.411	-14.262	-0.396
1	7	C_G907:C978_C	-0.014	-0.1	0.417	-10.748	-15.445	-10.185
1	27	C_G920:C968_C	-0.53	0.135	-0.002	-41.991	-42.244	2.658
1	18	C_G926:C912_C	-0.144	-0.169	0.591	9.729	-9.752	0.292
1	19	C_G927:C911_C	-0.241	-0.354	-1.052	-13.378	-17.216	2.479
1	21	C_G929:U947_C	-0.359	-0.194	-0.461	4.244	-4.178	-4.373
1	22	C_G930:C946_C	0.001	0.031	-0.495	-2.791	-4.23	3.464
1	23	C_G931:C945_C	-0.419	-0.178	-0.556	-9.111	-5.04	4.362
1	24	C_G932:C944_C	0.023	-0.063	-0.751	-7.676	-11.783	0.174
1	25	C_G933:C943_C	0.164	0.031	-0.609	-12.692	-7.748	-1.997
1	9	C_G962:C976_C	-0.173	-0.156	-0.822	-1.943	-20.237	2.273
1	10	C_G963:C975_C	-0.27	-0.087	-0.528	-0.779	-8.418	2.559
1	11	C_G964:C974_C	0.032	-0.168	0.068	5.07	-7.523	-1.247
1	12	C_G965:C973_C	-0.437	-0.15	0.684	-10.651	-7.603	5.822
1	16	C_U908:A914_C	4.753	-2.264	1.06	-1.034	19.765	-108.676
1	17	C_U909:G913_C	-5.348	0.312	0.897	27.05	31.118	-109.39
1	13	C_U966:A970_C	3.953	-1.742	1.006	-5.076	2.594	-87.37
1	14	C_U967:G919_C	1.214	-4.812	0.159	6.397	14.919	-94.029
1	56	D_A914:U908_D	-4.335	-2.151	0.12	7.677	0.316	-97.414
1	32	D_C902:G983_D	0.071	-0.073	-0.552	-0.165	-12.14	-5.264
1	53	D_C911:G927_D	0.258	-0.069	0.184	2.861	-7.781	3.204
1	54	D_C912:G926_D	-0.036	-0.088	0.466	-7.242	-11.669	1.56
1	58	D_C922:A971_D	-0.627	0.344	-2.484	-12.859	8.613	-87.145
1	47	D_C943:G933_D	0.102	-0.107	-0.734	16.354	-6.655	0.047
1	48	D_C944:G932_D	0.142	-0.038	-0.398	8.234	-5.948	0.896
1	49	D_C945:G931_D	-0.105	-0.012	-0.265	4.015	1.112	-1.275
1	50	D_C946:G930_D	0.139	-0.052	-0.344	9.18	-9.047	3.904
1	38	D_C961:G977_D	0.006	-0.19	1.034	-4.823	-0.93	-2.695
1	31	D_G901:C984_D	0.009	-0.681	-1.775	-3.625	2.736	-9.457
1	33	D_G903:C982_D	-0.249	-0.015	-0.014	-1.59	-15.948	-0.826
1	34	D_G904:C981_D	0.039	-0.194	0.757	3.73	-22.15	-4.864
1	35	D_G905:C980_D	-0.226	-0.131	-0.088	-10.714	2.263	0.849
1	36	D_G906:C979_D	-0.34	-0.175	-0.248	-10.882	-25.099	2.371
1	37	D_G907:C978_D	-0.2	-0.285	1.16	1.324	-11.834	1.713
1	52	D_G910:C928_D	-0.087	-0.125	0.301	11.134	-3.955	-1.779
1	55	D_G913:U909_D	3.707	2.33	0.729	-14.828	-2.515	-122.433
1	57	D_G915:C960_D	0.206	4.217	-0.135	-0.793	9.552	146.366
1	45	D_G920:C968_D	0.033	-0.028	-0.319	25.801	-35.422	-0.046
1	59	D_G955:C950_D	-0.284	-0.138	0.459	8.018	-6.843	1.081
1	60	D_G956:C949_D	-0.177	0.116	-0.324	-7.8	-10.65	3.182
1	61	D_G957:C948_D	-0.055	0.004	0.307	-0.763	-15.925	-1.077
1	39	D_G962:C976_D	-0.153	-0.087	-0.652	-5.06	-0.777	-1.658
1	40	D_G963:C975_D	-0.095	-0.093	-0.527	-6.967	8.04	-0.779
1	41	D_G964:C974_D	-0.175	-0.077	-0.446	-5.356	-13.7	3.577
1	42	D_G965:C973_D	-0.088	-0.077	-0.32	-12.595	-19.522	2.319
1	46	D_U942:A934_D	-0.021	-0.08	0.547	16.001	-6.857	-1.459
1	51	D_U947:G929_D	0.423	-0.386	-0.587	1.132	-3.435	-5.62
1	62	D_U958:A923_D	4.204	-2.478	-0.354	-3.26	-16.521	-89.606
1	63	D_U959:A924_D	3.988	-2.178	-0.174	9.156	-33.629	-98.986
1	43	D_U966:A970_D	4.378	-1.917	0.392	-4.998	11.525	-85.159
1	44	D_U967:G919_D	0.323	-6.616	-0.394	16.414	5.407	-98.71

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.