A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID: PR0145  PDB ID: 1WZ2 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
126C_A934:U942_C0.2880.089-0.2555.651-10.401-6.961
12C_C902:G983_C-0.022-0.092-0.5319.772-11.844-6.775
115C_C922:G915_C-0.6754.7490.362-0.419-5.78498.504
120C_C928:G910_C0.1370.055-0.608-4.938-15.3415.733
128C_C948:G957_C0.3070.053-0.016-2.389-3.599-2.839
129C_C949:G956_C-0.101-0.133-0.2262.279-10.956-3.52
130C_C950:G955_C0.366-0.244-0.769-3.349-2.6421.934
18C_C961:G977_C0.1550.024-0.26612.146-6.529-1.797
11C_G901:C984_C-0.270.0230.153-7.5044.043-1.08
13C_G903:C982_C-0.173-0.174-1.001-10.859-27.89714.26
14C_G904:C981_C-0.118-0.107-0.086-6.9816.097-1.161
15C_G905:C980_C0.058-0.231-0.886.2950.5020.963
16C_G906:C979_C-0.111-0.0910.155-17.411-14.262-0.396
17C_G907:C978_C-0.014-0.10.417-10.748-15.445-10.185
127C_G920:C968_C-0.530.135-0.002-41.991-42.2442.658
118C_G926:C912_C-0.144-0.1690.5919.729-9.7520.292
119C_G927:C911_C-0.241-0.354-1.052-13.378-17.2162.479
121C_G929:U947_C-0.359-0.194-0.4614.244-4.178-4.373
122C_G930:C946_C0.0010.031-0.495-2.791-4.233.464
123C_G931:C945_C-0.419-0.178-0.556-9.111-5.044.362
124C_G932:C944_C0.023-0.063-0.751-7.676-11.7830.174
125C_G933:C943_C0.1640.031-0.609-12.692-7.748-1.997
19C_G962:C976_C-0.173-0.156-0.822-1.943-20.2372.273
110C_G963:C975_C-0.27-0.087-0.528-0.779-8.4182.559
111C_G964:C974_C0.032-0.1680.0685.07-7.523-1.247
112C_G965:C973_C-0.437-0.150.684-10.651-7.6035.822
116C_U908:A914_C4.753-2.2641.06-1.03419.765-108.676
117C_U909:G913_C-5.3480.3120.89727.0531.118-109.39
113C_U966:A970_C3.953-1.7421.006-5.0762.594-87.37
114C_U967:G919_C1.214-4.8120.1596.39714.919-94.029
156D_A914:U908_D-4.335-2.1510.127.6770.316-97.414
132D_C902:G983_D0.071-0.073-0.552-0.165-12.14-5.264
153D_C911:G927_D0.258-0.0690.1842.861-7.7813.204
154D_C912:G926_D-0.036-0.0880.466-7.242-11.6691.56
158D_C922:A971_D-0.6270.344-2.484-12.8598.613-87.145
147D_C943:G933_D0.102-0.107-0.73416.354-6.6550.047
148D_C944:G932_D0.142-0.038-0.3988.234-5.9480.896
149D_C945:G931_D-0.105-0.012-0.2654.0151.112-1.275
150D_C946:G930_D0.139-0.052-0.3449.18-9.0473.904
138D_C961:G977_D0.006-0.191.034-4.823-0.93-2.695
131D_G901:C984_D0.009-0.681-1.775-3.6252.736-9.457
133D_G903:C982_D-0.249-0.015-0.014-1.59-15.948-0.826
134D_G904:C981_D0.039-0.1940.7573.73-22.15-4.864
135D_G905:C980_D-0.226-0.131-0.088-10.7142.2630.849
136D_G906:C979_D-0.34-0.175-0.248-10.882-25.0992.371
137D_G907:C978_D-0.2-0.2851.161.324-11.8341.713
152D_G910:C928_D-0.087-0.1250.30111.134-3.955-1.779
155D_G913:U909_D3.7072.330.729-14.828-2.515-122.433
157D_G915:C960_D0.2064.217-0.135-0.7939.552146.366
145D_G920:C968_D0.033-0.028-0.31925.801-35.422-0.046
159D_G955:C950_D-0.284-0.1380.4598.018-6.8431.081
160D_G956:C949_D-0.1770.116-0.324-7.8-10.653.182
161D_G957:C948_D-0.0550.0040.307-0.763-15.925-1.077
139D_G962:C976_D-0.153-0.087-0.652-5.06-0.777-1.658
140D_G963:C975_D-0.095-0.093-0.527-6.9678.04-0.779
141D_G964:C974_D-0.175-0.077-0.446-5.356-13.73.577
142D_G965:C973_D-0.088-0.077-0.32-12.595-19.5222.319
146D_U942:A934_D-0.021-0.080.54716.001-6.857-1.459
151D_U947:G929_D0.423-0.386-0.5871.132-3.435-5.62
162D_U958:A923_D4.204-2.478-0.354-3.26-16.521-89.606
163D_U959:A924_D3.988-2.178-0.1749.156-33.629-98.986
143D_U966:A970_D4.378-1.9170.392-4.99811.525-85.159
144D_U967:G919_D0.323-6.616-0.39416.4145.407-98.71

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.