A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 14-Oct-2020 number of released structures: 11024
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NDB ID: PD0591  PDB ID: 1X9W 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
111C_2DT22:DA5_D0.14-0.149-0.73219.6233.252.091
14C_DA15:DT12_D-0.2380.1620.183-5.814-13.66-0.091
110C_DA21:DT6_D-0.227-0.305-0.0813.2254.148-0.617
11C_DG12:DC15_D-0.7950.2380.733-6.70912.4077.713
12C_DG13:DC14_D-0.9080.364-0.575-16.352-2.197-2.208
15C_DG16:DC11_D-0.0880.017-0.057-7.798-9.326-5.383
17C_DG18:DC9_D-0.346-0.104-0.754-11.06-3.5752.371
19C_DG20:DC7_D0.022-0.186-0.58-10.0482.183-0.231
13C_DT14:DA13_D-0.4160.213-0.347-6.239-9.893-1.152
16C_DT17:DA10_D0.011-0.0630.032-1.076-10.0781.318
18C_DT19:DA8_D-0.133-0.187-0.4575.691-3.766-0.001

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.