A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID: UP0006  PDB ID: 1XJ9 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12A_APN105:TPN106_A0.14-0.277-0.2872.628-4.3081.249
14A_CPN107:GPN104_A0.46-0.253-0.154-4.142-0.29-7.427
11A_GPN104:CPN107_A-0.46-0.253-0.1544.142-0.29-7.427
13A_TPN106:APN105_A-0.14-0.277-0.287-2.628-4.3081.249

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.