1XJ9: Base Pair Morphology Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082

Search for released structures

NDB ID: UP0006 PDB ID: 1XJ9

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	2	A_APN105:TPN106_A	0.14	-0.277	-0.287	2.628	-4.308	1.249
1	4	A_CPN107:GPN104_A	0.46	-0.253	-0.154	-4.142	-0.29	-7.427
1	1	A_GPN104:CPN107_A	-0.46	-0.253	-0.154	4.142	-0.29	-7.427
1	3	A_TPN106:APN105_A	-0.14	-0.277	-0.287	-2.628	-4.308	1.249

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.