1XJ9: Base Pair Morphology Step Parameters

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As of 18-May-2022 number of released structures: 12082

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NDB ID: UP0006 PDB ID: 1XJ9

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	2	AA_APN105TPN106:APN105TPN106_AA	0.0	-2.925	3.515	0.0	-4.562	15.349	-6.496	0.0	4.2	-16.607	0.0	16.009
1	1	AA_GPN104APN105:TPN106CPN107_AA	0.303	-2.71	3.383	0.126	1.592	22.204	-7.621	-0.737	3.185	4.127	-0.328	22.261
1	3	AA_TPN106CPN107:GPN104APN105_AA	-0.303	-2.71	3.383	-0.126	1.592	22.204	-7.621	0.737	3.185	4.127	0.328	22.261

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.