A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 1-Dec-2021 number of released structures: 11785
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NDB ID: PD0600  PDB ID: 1XNS 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
15C_DA24:DT13_D-0.482-0.3810.5581.706-6.315-1.139
17C_DA26:DT11_D-0.008-0.3480.245-10.584-5.2690.413
110C_DA29:DT8_D0.45-0.272-0.174.812-13.2162.343
111C_DA30:DT7_D0.146-0.1960.1842.439-9.60.726
115C_DA34:DT3_D0.086-0.459-0.0852.106-9.936-5.001
13C_DC22:DG15_D0.055-0.1230.274-0.15-10.884.519
18C_DC27:DG10_D0.026-0.429-0.1556.0730.4732.174
12C_DG21:DC16_D-0.768-0.230.84411.679-12.633-2.385
19C_DG28:DC9_D-0.67-0.1710.22410.64-4.6852.323
112C_DG31:DC6_D-0.394-0.5170.193-6.106-18.1142.321
11C_DT20:DA17_D-0.471-0.025-0.1614.172-19.171-1.191
14C_DT23:DA14_D0.286-0.078-0.0336.657-2.651-0.157
16C_DT25:DA12_D0.099-0.5490.0691.901-11.131-2.967
113C_DT32:DA5_D0.114-0.0830.139-10.785-14.7712.053
114C_DT33:DA4_D0.201-0.27-0.14-3.736-12.991-1.158
116C_DT35:DA2_D0.303-0.258-0.147-0.288-18.987-2.483

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.