1XNS: Base Pair Morphology Parameters

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As of 31-May-2023 number of released structures: 12820

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NDB ID: PD0600 PDB ID: 1XNS

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	5	C_DA24:DT13_D	-0.482	-0.381	0.558	1.706	-6.315	-1.139
1	7	C_DA26:DT11_D	-0.008	-0.348	0.245	-10.584	-5.269	0.413
1	10	C_DA29:DT8_D	0.45	-0.272	-0.17	4.812	-13.216	2.343
1	11	C_DA30:DT7_D	0.146	-0.196	0.184	2.439	-9.6	0.726
1	15	C_DA34:DT3_D	0.086	-0.459	-0.085	2.106	-9.936	-5.001
1	3	C_DC22:DG15_D	0.055	-0.123	0.274	-0.15	-10.88	4.519
1	8	C_DC27:DG10_D	0.026	-0.429	-0.155	6.073	0.473	2.174
1	2	C_DG21:DC16_D	-0.768	-0.23	0.844	11.679	-12.633	-2.385
1	9	C_DG28:DC9_D	-0.67	-0.171	0.224	10.64	-4.685	2.323
1	12	C_DG31:DC6_D	-0.394	-0.517	0.193	-6.106	-18.114	2.321
1	1	C_DT20:DA17_D	-0.471	-0.025	-0.161	4.172	-19.171	-1.191
1	4	C_DT23:DA14_D	0.286	-0.078	-0.033	6.657	-2.651	-0.157
1	6	C_DT25:DA12_D	0.099	-0.549	0.069	1.901	-11.131	-2.967
1	13	C_DT32:DA5_D	0.114	-0.083	0.139	-10.785	-14.771	2.053
1	14	C_DT33:DA4_D	0.201	-0.27	-0.14	-3.736	-12.991	-1.158
1	16	C_DT35:DA2_D	0.303	-0.258	-0.147	-0.288	-18.987	-2.483

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.