1XPE: Base Pair Morphology Parameters

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As of 11-May-2022 number of released structures: 12077

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NDB ID: UR0046 PDB ID: 1XPE

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	1	A_C1:G23_A	0.182	-0.257	0.207	5.873	-18.017	-2.217
1	5	A_C5:G19_A	0.49	-0.388	0.242	3.739	-17.587	1.511
1	4	A_G4:C20_A	0.364	-0.196	0.016	1.145	-17.691	2.628
1	7	A_G7:C17_A	-0.156	-0.216	0.063	0.427	-8.673	-1.903
1	2	A_U2:A22_A	0.163	-0.134	0.298	-3.273	-19.503	0.178
1	3	A_U3:A21_A	0.251	-0.132	-0.018	2.428	-13.975	4.653
1	6	A_U6:G18_A	2.249	-0.53	0.136	-0.909	-23.424	6.731
1	18	B_A21:U3_B	-0.199	-0.261	0.273	-3.512	-11.392	3.081
1	19	B_A22:U2_B	-0.069	-0.148	0.136	-0.807	-14.9	1.954
1	9	B_C11:G14_A	-0.054	-0.165	0.199	-7.005	-11.844	-1.489
1	11	B_C13:G12_A	0.17	-0.177	0.036	3.706	-11.533	0.601
1	13	B_C15:G10_A	0.467	-0.266	-0.016	4.805	-9.521	1.951
1	14	B_C17:G7_B	0.006	-0.248	0.107	-0.632	-10.956	0.112
1	17	B_C20:G4_B	0.575	-0.22	0.05	-1.516	-12.754	4.972
1	8	B_G10:C15_A	-0.378	-0.2	-0.267	-13.995	-14.027	2.274
1	10	B_G12:C13_A	0.016	-0.125	-0.06	-4.734	-12.122	0.163
1	12	B_G14:C11_A	-0.207	-0.291	0.151	4.374	-12.073	-0.514
1	15	B_G18:U6_B	-2.107	-0.454	-0.107	2.494	-23.62	7.895
1	16	B_G19:C5_B	-0.194	-0.269	0.116	-6.935	-16.515	3.779
1	20	B_G23:C1_B	-0.236	-0.256	0.229	-9.287	-16.439	-2.217

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.