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As of 11-Dec-2019 number of released structures: 10507
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NDB ID: PD0604  PDB ID: 1XSL 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
19B_DA10:DT2_C0.258-0.144-0.055.786-9.726-7.454
11B_DC1:DG4_D0.513-0.3220.133-6.468-14.3842.454
14B_DC4:DG1_D0.096-0.06-0.09211.741-11.4930.109
16B_DC7:DG5_C0.232-0.143-0.081-5.784-8.2310.212
18B_DC9:DG3_C0.107-0.1190.1129.455-19.1870.216
110B_DC11:DG1_C0.249-0.191-0.22611.19-6.722-1.956
12B_DG2:DC3_D-0.07-0.2480.1053.191-6.799-4.941
13B_DG3:DC2_D-0.219-0.0280.0580.876-5.1-0.67
15B_DG6:DC6_C-0.301-0.131-0.0340.516-8.593.714
17B_DG8:DC4_C-0.108-0.0660.15511.275-0.662-1.361
123F_DA10:DT2_G0.16-0.0430.22510.403-13.103-5.265
120F_DC7:DG5_G0.119-0.117-0.1520.418-6.08-6.17
122F_DC9:DG3_G0.2730.023-0.05712.843-12.003-0.778
124F_DC11:DG1_G0.364-0.312-0.3514.138-7.4840.368
119F_DG6:DC6_G-0.3090.030.0013.38-9.5222.301
121F_DG8:DC4_G-0.0860.0890.17915.807-2.432-2.862
112H_DC2:DG3_F0.077-0.0480.194-2.2890.052-1.816
113H_DC3:DG2_F0.01-0.1370.0310.05-7.222-3.471
111H_DG1:DC4_F0.239-0.128-0.542-10.843-2.612-3.245
114H_DG4:DC1_F0.19-0.129-0.3582.054-9.288-4.321
129J_DA10:DT2_K0.45-0.0730.30811.572-10.711-5.462
115J_DC1:DG4_L-0.068-0.222-0.119-5.787-9.358-3.488
118J_DC4:DG1_L0.027-0.062-0.53317.8510.497-4.891
126J_DC7:DG5_K0.035-0.142-0.244-0.657-4.908-6.715
128J_DC9:DG3_K0.229-0.134-0.08615.489-14.033-4.0
130J_DC11:DG1_K-0.147-0.176-0.33714.991-4.785-0.606
116J_DG2:DC3_L-0.0660.0290.1473.445-7.754-2.421
117J_DG3:DC2_L-0.1180.0310.3063.3350.355-1.216
125J_DG6:DC6_K-0.095-0.017-0.12-2.342-6.5512.249
127J_DG8:DC4_K-0.135-0.099-0.0348.716-6.025-1.035
139N_DA10:DT2_O0.401-0.0750.188.638-10.979-7.044
131N_DC1:DG4_P0.005-0.2770.088-3.954-8.32-2.337
134N_DC4:DG1_P-0.278-0.012-0.42715.865-5.599-2.096
136N_DC7:DG5_O0.068-0.094-0.092-2.282-6.965-2.212
138N_DC9:DG3_O0.172-0.106-0.25713.44-16.984-2.384
140N_DC11:DG1_O0.042-0.187-0.21311.673-5.96-2.488
132N_DG2:DC3_P-0.0980.0190.3175.124-8.061.321
133N_DG3:DC2_P-0.066-0.0370.0193.974-3.9190.266
135N_DG6:DC6_O-0.083-0.1510.074-1.059-9.947-0.189
137N_DG8:DC4_O-0.135-0.0750.0019.061-1.587-2.752

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.