A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 14-Aug-2019 number of released structures: 10334
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NDB ID: PD0604  PDB ID: 1XSL 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
18BB_DA10DC11:DG1DT2_CC0.917-0.6423.1990.1673.26833.136-1.649-1.5733.1285.713-0.29333.293
11BB_DC1DG2:DC3DG4_DD-0.2430.5333.1690.08112.06530.53-1.1370.4443.14821.869-0.14632.775
15BB_DC7DG8:DC4DG5_CC-0.3660.4323.049-0.89410.1329.95-1.0050.5143.03918.9271.67131.592
17BB_DC9DA10:DT2DG3_CC-0.5370.2773.4322.46510.0439.378-0.7791.0623.36214.596-3.58440.66
12BB_DG2DG3:DC2DC3_DD0.053-0.453.319-0.0094.64334.325-1.475-0.093.2327.8230.01534.628
13BB_DG3DC4:DG1DC2_DD0.623-0.8772.980.2228.63833.073-2.696-1.0312.67714.861-0.38234.152
14BB_DG6DC7:DG5DC6_CC-0.393-0.2693.498-0.903-2.6538.616-0.0580.4743.516-4.0011.36438.713
16BB_DG8DC9:DG3DC4_CC-0.171-0.3163.333-1.045-1.88831.89-0.2250.1173.349-3.4321.931.961
120FF_DA10DC11:DG1DT2_GG1.064-0.6633.2064.0571.7735.28-1.342-1.1553.2692.905-6.66235.548
117FF_DC7DG8:DC4DG5_GG-0.0650.5493.152-1.8336.20331.837-0.085-0.23.19711.1643.29932.471
119FF_DC9DA10:DT2DG3_GG-0.4320.473.375-0.0165.91639.398-0.0230.6323.4088.7160.02339.822
116FF_DG6DC7:DG5DC6_GG-0.483-0.373.3270.3311.73634.997-0.8780.8533.3012.884-0.5535.041
118FF_DG8DC9:DG3DC4_GG-0.046-0.1723.4010.6882.97431.155-0.9020.2213.3695.521-1.27831.301
110HH_DC2DC3:DG2DG3_FF-0.029-0.413.2640.9390.99934.858-0.8340.193.251.668-1.56634.884
111HH_DC3DG4:DC1DG2_FF0.1410.713.3194.23412.81835.603-0.6370.3543.36320.094-6.63737.999
19HH_DG1DC2:DG3DC4_FF-0.774-0.7393.032-6.32310.56428.313-3.2750.3292.69720.41912.22230.824
112HJ_DG4DC1:DG4DC1_LF-0.1690.4463.298-2.1221.61648.4780.4160.0413.3141.9662.58248.547
125JJ_DA10DC11:DG1DT2_KK0.929-0.7693.1755.633.16131.098-1.978-0.6813.1985.818-10.36131.745
113JJ_DC1DG2:DC3DG4_LL-0.0350.8263.132-3.8068.12835.4570.211-0.4623.22413.0896.12936.54
122JJ_DC7DG8:DC4DG5_KK-0.0390.6183.270.3758.1832.065-0.330.1343.32214.515-0.66533.068
124JJ_DC9DA10:DT2DG3_KK-0.220.2113.4340.0597.52740.574-0.5580.3193.41710.742-0.08441.238
114JJ_DG2DG3:DC2DC3_LL0.009-0.5123.266-0.8122.31934.273-1.227-0.1413.2243.9281.37634.358
115JJ_DG3DC4:DG1DC2_LL0.72-0.6092.9825.1646.41630.605-2.195-0.4512.87911.888-9.56731.669
121JJ_DG6DC7:DG5DC6_KK-0.513-0.4193.212-0.748-0.4334.112-0.6480.7573.227-0.7321.27634.122
123JJ_DG8DC9:DG3DC4_KK-0.161-0.2263.148-1.4220.48231.456-0.5030.0423.1480.8882.62131.491
133NN_DA10DC11:DG1DT2_OO0.926-0.7883.2242.352.73530.564-2.012-1.2913.2035.166-4.43930.771
126NN_DC1DG2:DC3DG4_PP0.2170.833.112-1.7215.44537.2780.602-0.5513.1848.4572.67337.697
130NN_DC7DG8:DC4DG5_OO-0.3150.4973.1970.2898.49431.344-0.60.6143.21515.371-0.52332.448
132NN_DC9DA10:DT2DG3_OO-0.3930.2683.453-1.8618.49340.388-0.5960.3433.45212.1312.65841.275
127NN_DG2DG3:DC2DC3_PP-0.148-0.2643.3481.9332.59534.48-0.850.5523.3074.366-3.25234.627
128NN_DG3DC4:DG1DC2_PP0.649-0.763.0442.7658.75229.09-3.031-0.7342.75316.902-5.3430.474
129NN_DG6DC7:DG5DC6_OO-0.289-0.373.284-0.849-0.44534.981-0.5480.3533.294-0.741.41234.993
131NN_DG8DC9:DG3DC4_OO-0.22-0.2283.1560.5062.42131.26-0.8610.4993.1264.484-0.93631.356

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.