A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 23-Nov-2022 number of released structures: 12471
Search for released structures

NDB ID: 1XST  PDB ID: 1XST 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
13A_A3:U25_A0.059-0.226-0.0057.606-25.284-8.627
14A_A4:U24_A0.242-0.09-0.784-9.299-15.9510.099
16A_C7:G22_A0.066-0.304-0.60510.64516.778-6.861
17A_C8:G21_A0.01-0.359-0.8112.9449.782-11.129
111A_C12:G17_A0.273-0.501-0.998-3.207-2.263-1.161
11A_G1:C27_A-0.342-0.484-0.55523.3350.816-0.768
12A_G2:C26_A-0.302-0.359-0.67510.569-3.52.279
15A_G5:C23_A-0.329-0.337-0.826-3.983-7.5270.819
18A_G9:C20_A0.179-0.425-1.233-13.1343.86-11.739
19A_G10:C19_A-0.235-0.4180.63-18.4046.2656.918
110A_U11:A18_A-0.381-0.245-0.756-12.9330.29-12.326
112A_U13:G16_A1.301-5.5230.0684.668-18.953-87.979

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.