1XWU: Base Pair Morphology Parameters

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As of 18-May-2022 number of released structures: 12082

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NDB ID: 1XWU PDB ID: 1XWU

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	3	A_A3:U13_A	-0.012	0.047	-0.47	-28.206	-20.141	0.493
1	4	A_A4:U12_A	-0.233	0.021	-0.29	-22.91	-22.047	-5.012
1	5	A_A5:A11_A	-1.647	1.623	-0.031	-14.683	-1.098	-16.878
1	1	A_C1:G15_A	0.342	-0.034	-0.596	19.723	-23.567	1.647
1	6	A_C6:G10_A	0.542	-0.057	0.825	-21.185	8.184	0.145
1	2	A_G2:C14_A	-0.206	0.04	-0.749	-29.247	-18.144	-2.541

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.