1Y3O: Base Pair Morphology Parameters

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As of 18-May-2022 number of released structures: 12082

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NDB ID: UR0049 PDB ID: 1Y3O

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	3	A_5BU3:A21_A	-0.032	-0.215	0.164	0.888	-13.007	-1.135
1	12	A_A14:U11_B	0.097	-0.15	0.123	7.633	-6.118	-3.601
1	1	A_C1:G23_A	-0.384	-0.26	-0.026	10.498	-15.001	-6.503
1	5	A_C5:G19_A	0.272	-0.216	-0.144	4.804	-15.821	4.702
1	11	A_C13:G12_B	0.045	-0.122	-0.028	5.034	-1.758	1.817
1	13	A_C15:G10_B	0.373	-0.118	-0.442	12.419	-11.517	6.328
1	4	A_G4:C20_A	0.206	-0.092	-0.217	-1.301	-10.856	1.802
1	7	A_G7:C17_A	0.251	-0.122	-0.098	2.973	-8.501	-1.853
1	8	A_G10:C15_B	-0.215	-0.241	-0.171	-14.224	-12.957	0.365
1	10	A_G12:C13_B	-0.041	-0.162	-0.223	-7.097	-6.4	1.947
1	2	A_U2:A22_A	0.204	-0.148	-0.085	4.192	-15.146	-3.192
1	6	A_U6:A18_A	-0.108	-0.331	0.317	-4.596	-9.586	1.469
1	9	A_U11:A14_B	0.037	-0.182	0.33	-9.055	-11.027	-1.04
1	16	B_5BU3:A21_B	-0.079	-0.076	-0.201	2.231	-14.169	1.543
1	14	B_C1:G23_B	-0.484	-0.258	0.044	5.048	-13.238	-2.906
1	18	B_C5:G19_B	-0.141	-0.124	0.03	2.821	-11.147	-2.214
1	17	B_G4:C20_B	-0.426	-0.135	0.216	0.535	-8.291	3.867
1	20	B_G7:C17_B	0.065	-0.145	0.457	6.308	-8.907	1.688
1	15	B_U2:A22_B	-0.317	-0.117	-0.02	7.978	-10.442	4.178
1	19	B_U6:A18_B	0.246	-0.221	0.171	-4.138	-14.306	5.519

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.