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As of 18-May-2022 number of released structures: 12082
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NDB ID: UR0049  PDB ID: 1Y3O 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
13AA_5BU3G4:C20A21_AA-0.353-1.6673.259-0.6039.47830.883-4.5540.5362.6517.2921.132.277
111AA_A14C15:G10U11_BB0.847-1.2823.1655.2572.94932.966-2.696-0.6293.1355.143-9.16933.497
11AA_C1U2:A22G23_AA0.309-1.6823.354-0.3976.16640.851-3.04-0.483.0778.7730.56541.296
15AA_C5U6:A18G19_AA0.128-1.5883.472-2.9199.09829.038-4.802-0.8162.8317.5545.63330.538
110AA_C13A14:U11G12_BB-0.197-1.6253.049-0.91910.60730.199-4.5840.2162.36319.6081.69831.98
14AA_G4C5:G19C20_AA0.019-1.0583.056-2.0932.7133.478-2.235-0.3472.9574.6883.62233.648
17AA_G10U11:A14C15_BB-0.627-1.6213.052-5.3132.38133.879-3.090.2882.9954.059.03534.361
19AA_G12C13:G12C13_BB0.157-0.9832.992-1.9045.7931.476-2.705-0.5882.75810.5493.46832.046
12AA_U25BU3:A21A22_AA-0.766-2.0043.175-4.04410.74429.272-5.4840.7452.3920.3037.64131.397
16AA_U6G7:C17A18_AA0.22-1.532.9595.75612.04830.155-4.40.4242.20721.861-10.44432.916
18AA_U11G12:C13A14_BB-0.333-1.5323.2193.5087.03629.924-4.1361.2542.7413.338-6.6530.917
114BB_5BU3G4:C20A21_BB-0.031-1.6133.105-5.0239.88329.832-4.53-0.7482.43418.4169.35931.782
112BB_C1U2:A22G23_BB0.379-1.6543.183-0.5246.49734.764-3.612-0.6972.83210.7560.86835.351
116BB_C5U6:A18G19_BB0.491-1.4193.4512.8117.22834.551-3.419-0.3873.12911.983-4.6635.385
115BB_G4C5:G19C20_BB-0.201-1.5433.09-0.7834.36834.459-3.1970.2272.8837.3361.31434.735
113BB_U25BU3:A21A22_BB-0.737-1.7223.366-1.0099.65331.414-4.6291.1382.75217.3181.8132.844
117BB_U6G7:C17A18_BB0.086-1.5962.819-0.20911.37527.859-4.874-0.22.02522.4750.41330.05

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.