A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-Dec-2019 number of released structures: 10507
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NDB ID: AD0034  PDB ID: 1Y7F 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
16A_2NT6:DA15_B-0.068-0.0860.3025.133-13.8255.097
15A_DA5:2NT16_B0.224-0.1070.179-2.295-12.799-5.721
17A_DA7:DT14_B-0.044-0.1430.0873.451-11.6551.181
12A_DC2:DG19_B0.095-0.109-0.1228.112-16.0591.23
18A_DC8:DG13_B0.235-0.173-0.0396.55-12.395-0.612
110A_DC10:DG11_B0.189-0.1210.139-4.786.182-0.288
11A_DG1:DC20_B-0.286-0.1450.1832.254-5.765-2.345
13A_DG3:DC18_B-0.303-0.092-0.053-8.514-15.052.28
19A_DG9:DC12_B-0.171-0.123-0.074-6.991-10.0342.773
14A_DT4:DA17_B-0.114-0.095-0.067-2.737-15.978-0.564

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.