A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-Dec-2019 number of released structures: 10507
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NDB ID: AD0042  PDB ID: 1Y8V 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
15A_DA5:P2T16_B0.133-0.0780.199-1.062-11.155-4.834
17A_DA7:DT14_B-0.015-0.1240.0826.226-12.3132.744
12A_DC2:DG19_B0.1120.0060.0954.473-13.3291.535
18A_DC8:DG13_B0.129-0.185-0.16210.289-13.1950.952
110A_DC10:DG11_B0.195-0.1510.048-2.6152.0670.23
11A_DG1:DC20_B-0.315-0.1710.1961.596-5.119-0.972
13A_DG3:DC18_B-0.284-0.2080.073-6.466-15.4690.315
19A_DG9:DC12_B-0.201-0.124-0.087-7.235-10.3831.312
14A_DT4:DA17_B-0.185-0.11-0.024-6.08-17.343-0.35
16A_P2T6:DA15_B-0.151-0.1390.2216.405-12.3923.569

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.