1Y8V: Base Pair Morphology Step Parameters

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NDB ID: AD0042 PDB ID: 1Y8V

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	5	AA_DA5P2T6:DA15P2T16_BB	0.681	-1.356	3.125	0.829	4.889	31.728	-3.265	-1.094	2.906	8.874	-1.505	32.103
1	7	AA_DA7DC8:DG13DT14_BB	0.148	-1.711	3.279	1.456	4.094	30.881	-3.94	-0.006	3.036	7.64	-2.717	31.178
1	2	AA_DC2DG3:DC18DG19_BB	0.164	-2.264	3.429	1.567	10.66	25.42	-7.132	0.006	2.314	22.955	-3.375	27.575
1	8	AA_DC8DG9:DC12DG13_BB	-0.345	-1.909	3.65	-0.241	13.057	29.25	-5.825	0.582	2.587	24.382	0.451	31.975
1	1	AA_DG1DC2:DG19DC20_BB	0.313	-1.51	3.235	2.15	-0.29	38.677	-2.242	-0.21	3.258	-0.438	-3.244	38.736
1	3	AA_DG3DT4:DA17DC18_BB	-1.086	-1.428	3.19	-1.842	5.145	36.448	-2.926	1.48	3.017	8.169	2.925	36.841
1	9	AA_DG9DC10:DG11DC12_BB	0.228	-1.492	3.251	0.665	3.159	35.286	-2.904	-0.28	3.113	5.197	-1.094	35.428
1	4	AA_DT4DA5:P2T16DA17_BB	0.572	-1.55	3.141	0.484	18.501	24.588	-5.885	-1.004	1.617	37.409	-0.979	30.689
1	6	AA_P2T6DA7:DT14DA15_BB	-0.079	-1.412	3.091	0.991	13.561	30.884	-4.337	0.276	2.284	24.056	-1.758	33.678

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.