A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 14-Aug-2019 number of released structures: 10334
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NDB ID: AD0042  PDB ID: 1Y8V 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
15AA_DA5P2T6:DA15P2T16_BB0.681-1.3563.1250.8294.88931.728-3.265-1.0942.9068.874-1.50532.103
17AA_DA7DC8:DG13DT14_BB0.148-1.7113.2791.4564.09430.881-3.94-0.0063.0367.64-2.71731.178
12AA_DC2DG3:DC18DG19_BB0.164-2.2643.4291.56710.6625.42-7.1320.0062.31422.955-3.37527.575
18AA_DC8DG9:DC12DG13_BB-0.345-1.9093.65-0.24113.05729.25-5.8250.5822.58724.3820.45131.975
11AA_DG1DC2:DG19DC20_BB0.313-1.513.2352.15-0.2938.677-2.242-0.213.258-0.438-3.24438.736
13AA_DG3DT4:DA17DC18_BB-1.086-1.4283.19-1.8425.14536.448-2.9261.483.0178.1692.92536.841
19AA_DG9DC10:DG11DC12_BB0.228-1.4923.2510.6653.15935.286-2.904-0.283.1135.197-1.09435.428
14AA_DT4DA5:P2T16DA17_BB0.572-1.553.1410.48418.50124.588-5.885-1.0041.61737.409-0.97930.689
16AA_P2T6DA7:DT14DA15_BB-0.079-1.4123.0910.99113.56130.884-4.3370.2762.28424.056-1.75833.678

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.