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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 4-Dec-2019 number of released structures: 10490
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NDB ID:
AD0042
PDB ID:
1Y8V
 
Base Pair Morphology Step Parameters
CSV Format
Model Number
Step Number
Step Name
Shift
Slide
Rise
Tilt
Roll
Twist
X-Displacement
Y-Displacement
Helical Rise
Inclination
Tip
Helical Twist
1
5
AA_DA5P2T6:DA15P2T16_BB
0.681
-1.356
3.125
0.829
4.889
31.728
-3.265
-1.094
2.906
8.874
-1.505
32.103
1
7
AA_DA7DC8:DG13DT14_BB
0.148
-1.711
3.279
1.456
4.094
30.881
-3.94
-0.006
3.036
7.64
-2.717
31.178
1
2
AA_DC2DG3:DC18DG19_BB
0.164
-2.264
3.429
1.567
10.66
25.42
-7.132
0.006
2.314
22.955
-3.375
27.575
1
8
AA_DC8DG9:DC12DG13_BB
-0.345
-1.909
3.65
-0.241
13.057
29.25
-5.825
0.582
2.587
24.382
0.451
31.975
1
1
AA_DG1DC2:DG19DC20_BB
0.313
-1.51
3.235
2.15
-0.29
38.677
-2.242
-0.21
3.258
-0.438
-3.244
38.736
1
3
AA_DG3DT4:DA17DC18_BB
-1.086
-1.428
3.19
-1.842
5.145
36.448
-2.926
1.48
3.017
8.169
2.925
36.841
1
9
AA_DG9DC10:DG11DC12_BB
0.228
-1.492
3.251
0.665
3.159
35.286
-2.904
-0.28
3.113
5.197
-1.094
35.428
1
4
AA_DT4DA5:P2T16DA17_BB
0.572
-1.55
3.141
0.484
18.501
24.588
-5.885
-1.004
1.617
37.409
-0.979
30.689
1
6
AA_P2T6DA7:DT14DA15_BB
-0.079
-1.412
3.091
0.991
13.561
30.884
-4.337
0.276
2.284
24.056
-1.758
33.678
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.