1Y9F: Base Pair Morphology Parameters

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As of 18-May-2022 number of released structures: 12082

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NDB ID: AD0039 PDB ID: 1Y9F

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	6	A_2AT6:DA15_B	0.003	-0.131	0.236	5.471	-12.912	2.712
1	5	A_DA5:2AT16_B	0.172	-0.117	0.071	-3.431	-14.76	-2.223
1	7	A_DA7:DT14_B	0.01	-0.177	-0.015	6.676	-11.361	2.458
1	2	A_DC2:DG19_B	0.109	-0.083	0.037	5.588	-14.773	0.584
1	8	A_DC8:DG13_B	0.2	-0.194	-0.142	11.87	-14.138	-0.16
1	10	A_DC10:DG11_B	0.254	-0.2	-0.016	-0.827	4.324	-1.84
1	1	A_DG1:DC20_B	-0.341	-0.142	0.151	-0.625	-7.809	-1.47
1	3	A_DG3:DC18_B	-0.382	-0.185	0.157	-6.688	-16.461	0.616
1	9	A_DG9:DC12_B	-0.165	-0.175	-0.116	-7.329	-10.468	1.197
1	4	A_DT4:DA17_B	-0.132	-0.098	-0.016	-3.818	-15.681	0.702

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.