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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID:
AD0039
PDB ID:
1Y9F
 
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
6
A_2AT6:DA15_B
0.003
-0.131
0.236
5.471
-12.912
2.712
1
5
A_DA5:2AT16_B
0.172
-0.117
0.071
-3.431
-14.76
-2.223
1
7
A_DA7:DT14_B
0.01
-0.177
-0.015
6.676
-11.361
2.458
1
2
A_DC2:DG19_B
0.109
-0.083
0.037
5.588
-14.773
0.584
1
8
A_DC8:DG13_B
0.2
-0.194
-0.142
11.87
-14.138
-0.16
1
10
A_DC10:DG11_B
0.254
-0.2
-0.016
-0.827
4.324
-1.84
1
1
A_DG1:DC20_B
-0.341
-0.142
0.151
-0.625
-7.809
-1.47
1
3
A_DG3:DC18_B
-0.382
-0.185
0.157
-6.688
-16.461
0.616
1
9
A_DG9:DC12_B
-0.165
-0.175
-0.116
-7.329
-10.468
1.197
1
4
A_DT4:DA17_B
-0.132
-0.098
-0.016
-3.818
-15.681
0.702
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.