A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 16-Oct-2019 number of released structures: 10422
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NDB ID: AD0039  PDB ID: 1Y9F 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
16A_2AT6:DA15_B0.003-0.1310.2365.471-12.9122.712
15A_DA5:2AT16_B0.172-0.1170.071-3.431-14.76-2.223
17A_DA7:DT14_B0.01-0.177-0.0156.676-11.3612.458
12A_DC2:DG19_B0.109-0.0830.0375.588-14.7730.584
18A_DC8:DG13_B0.2-0.194-0.14211.87-14.138-0.16
110A_DC10:DG11_B0.254-0.2-0.016-0.8274.324-1.84
11A_DG1:DC20_B-0.341-0.1420.151-0.625-7.809-1.47
13A_DG3:DC18_B-0.382-0.1850.157-6.688-16.4610.616
19A_DG9:DC12_B-0.165-0.175-0.116-7.329-10.4681.197
14A_DT4:DA17_B-0.132-0.098-0.016-3.818-15.6810.702

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.