A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID: 1YG3  PDB ID: 1YG3 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11A_A3:U18_A0.039-0.1030.0030.488-1.018-0.613
16A_C28:G12_A0.008-0.2090.528-3.112-10.424-6.896
12A_G4:C17_A-0.049-0.0340.0531.0750.1414.57
14A_G6:C15_A0.019-0.130.0150.281-0.146-4.746
15A_G7:C14_A-0.047-0.0820.0320.462-1.2791.318
17A_G29:C11_A0.052-0.0810.0432.0580.875-1.943
18A_G30:C10_A-0.113-0.140.0371.2780.322-3.805
13A_U5:A16_A-0.119-0.118-0.033-0.119-0.9030.437

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.