A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-May-2022 number of released structures: 12077
Search for released structures

NDB ID: 1YNG  PDB ID: 1YNG 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
13A_A3:U29_A0.2710.01-0.041-7.192-9.668-1.029
15A_A5:U27_A0.336-0.2270.9381.705-11.8742.378
19A_A10:U21_A0.0090.0620.419-0.327-15.30110.719
11A_G1:C31_A0.4312.9930.83341.63414.398122.533
12A_G2:C30_A-0.935-0.347-0.054-2.223-11.6153.612
18A_G9:C22_A-0.419-0.1970.4263.226-13.724-1.877
14A_U4:A28_A0.204-0.1430.253-5.303-9.043-2.202
16A_U6:A26_A0.219-0.0560.537-4.794-12.779-2.599
17A_U8:A23_A-0.2120.1290.8246.127-15.8680.602
110A_U11:A20_A0.3330.0570.234-4.736-16.8311.868

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.