1YNG: Base Pair Morphology Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-May-2022 number of released structures: 12077

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NDB ID: 1YNG PDB ID: 1YNG

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	3	A_A3:U29_A	0.271	0.01	-0.041	-7.192	-9.668	-1.029
1	5	A_A5:U27_A	0.336	-0.227	0.938	1.705	-11.874	2.378
1	9	A_A10:U21_A	0.009	0.062	0.419	-0.327	-15.301	10.719
1	1	A_G1:C31_A	0.431	2.993	0.833	41.634	14.398	122.533
1	2	A_G2:C30_A	-0.935	-0.347	-0.054	-2.223	-11.615	3.612
1	8	A_G9:C22_A	-0.419	-0.197	0.426	3.226	-13.724	-1.877
1	4	A_U4:A28_A	0.204	-0.143	0.253	-5.303	-9.043	-2.202
1	6	A_U6:A26_A	0.219	-0.056	0.537	-4.794	-12.779	-2.599
1	7	A_U8:A23_A	-0.212	0.129	0.824	6.127	-15.868	0.602
1	10	A_U11:A20_A	0.333	0.057	0.234	-4.736	-16.83	11.868

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.