A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID: 1YNG  PDB ID: 1YNG 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
13AA_A3U4:A28U29_AA-0.034-1.7673.357-0.877-5.7829.655-2.126-0.1273.628-11.1561.69330.213
15AA_A5U6:A26U27_AA-0.191-2.0473.3783.527-2.61732.264-3.170.993.489-4.682-6.3132.553
18AA_A10U11:A20U21_AA-0.028-1.5573.3641.5731.98432.369-3.1380.333.263.552-2.81632.465
11AA_G1G2:C30C31_AA2.7391.7964.0277.34913.71999.6240.895-1.6354.3288.94-4.789100.513
12AA_G2A3:U29C30_AA0.021-1.4653.4090.896.41334.935-3.3430.0973.110.57-1.46735.512
17AA_G9A10:U21C22_AA0.644-1.693.273-0.3622.83834.579-3.26-1.1343.1224.7650.60734.694
14AA_U4A5:U27A28_AA0.482-1.7572.777-2.8260.08935.001-2.924-1.1562.7260.1484.68935.111
16AA_U8G9:C22A23_AA-0.445-1.6043.051-0.4582.98535.67-3.0020.6642.9174.8620.74635.793

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.