1YNG: Base Pair Morphology Step Parameters

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As of 18-May-2022 number of released structures: 12082

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NDB ID: 1YNG PDB ID: 1YNG

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	3	AA_A3U4:A28U29_AA	-0.034	-1.767	3.357	-0.877	-5.78	29.655	-2.126	-0.127	3.628	-11.156	1.693	30.213
1	5	AA_A5U6:A26U27_AA	-0.191	-2.047	3.378	3.527	-2.617	32.264	-3.17	0.99	3.489	-4.682	-6.31	32.553
1	8	AA_A10U11:A20U21_AA	-0.028	-1.557	3.364	1.573	1.984	32.369	-3.138	0.33	3.26	3.552	-2.816	32.465
1	1	AA_G1G2:C30C31_AA	2.739	1.796	4.027	7.349	13.719	99.624	0.895	-1.635	4.328	8.94	-4.789	100.513
1	2	AA_G2A3:U29C30_AA	0.021	-1.465	3.409	0.89	6.413	34.935	-3.343	0.097	3.1	10.57	-1.467	35.512
1	7	AA_G9A10:U21C22_AA	0.644	-1.69	3.273	-0.362	2.838	34.579	-3.26	-1.134	3.122	4.765	0.607	34.694
1	4	AA_U4A5:U27A28_AA	0.482	-1.757	2.777	-2.826	0.089	35.001	-2.924	-1.156	2.726	0.148	4.689	35.111
1	6	AA_U8G9:C22A23_AA	-0.445	-1.604	3.051	-0.458	2.985	35.67	-3.002	0.664	2.917	4.862	0.746	35.793

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.