A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-May-2022 number of released structures: 12077
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NDB ID: DR0011  PDB ID: 1YRJ 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
17A_A10:U38_B-0.4570.1060.1523.06-24.4671.983
12A_C4:G45_B0.969-0.3210.041-4.987-9.811-5.458
15A_C7:G42_B0.281-0.0580.547-2.161-21.3719.132
16A_C9:G39_B0.454-0.10.2181.127-0.1467.873
18A_C11:G37_B1.367-0.529-0.0028.392-10.9855.405
19A_C12:G36_B-0.555-0.30.4462.629-11.7045.89
116A_C21:G28_B1.153-0.6370.515-2.422-14.556.16
118A_C23:G26_B0.567-0.0510.1242.537-5.4392.779
11A_G3:C46_B0.333-0.3480.408-4.0517.547-6.749
13A_G5:C44_B-0.664-0.678-1.03-23.14-9.3981.696
110A_G13:C35_B-0.071-0.130.217-3.981-12.8142.801
111A_G14:C34_B-0.458-0.761-0.189-2.585-21.917-0.771
113A_G16:C32_B-0.2380.1830.4684.616-15.0255.973
114A_G19:C30_B0.616-0.14-0.1024.008-17.838-5.288
117A_G22:C27_B-0.285-0.1790.101-0.993-10.377.747
14A_U6:U43_B-2.689-1.9461.051-5.222-26.01310.839
112A_U15:A33_B-0.8-0.535-0.2113.873-12.8537.803
115A_U20:U29_B1.647-1.6780.058-0.702-17.372.24

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.