1YRJ: Base Pair Morphology Parameters

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As of 11-May-2022 number of released structures: 12077

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NDB ID: DR0011 PDB ID: 1YRJ

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	7	A_A10:U38_B	-0.457	0.106	0.152	3.06	-24.467	1.983
1	2	A_C4:G45_B	0.969	-0.321	0.041	-4.987	-9.811	-5.458
1	5	A_C7:G42_B	0.281	-0.058	0.547	-2.161	-21.371	9.132
1	6	A_C9:G39_B	0.454	-0.1	0.218	1.127	-0.146	7.873
1	8	A_C11:G37_B	1.367	-0.529	-0.002	8.392	-10.985	5.405
1	9	A_C12:G36_B	-0.555	-0.3	0.446	2.629	-11.704	5.89
1	16	A_C21:G28_B	1.153	-0.637	0.515	-2.422	-14.55	6.16
1	18	A_C23:G26_B	0.567	-0.051	0.124	2.537	-5.439	2.779
1	1	A_G3:C46_B	0.333	-0.348	0.408	-4.051	7.547	-6.749
1	3	A_G5:C44_B	-0.664	-0.678	-1.03	-23.14	-9.398	1.696
1	10	A_G13:C35_B	-0.071	-0.13	0.217	-3.981	-12.814	2.801
1	11	A_G14:C34_B	-0.458	-0.761	-0.189	-2.585	-21.917	-0.771
1	13	A_G16:C32_B	-0.238	0.183	0.468	4.616	-15.025	5.973
1	14	A_G19:C30_B	0.616	-0.14	-0.102	4.008	-17.838	-5.288
1	17	A_G22:C27_B	-0.285	-0.179	0.101	-0.993	-10.37	7.747
1	4	A_U6:U43_B	-2.689	-1.946	1.051	-5.222	-26.013	10.839
1	12	A_U15:A33_B	-0.8	-0.535	-0.211	3.873	-12.853	7.803
1	15	A_U20:U29_B	1.647	-1.678	0.058	-0.702	-17.37	2.24

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.