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As of 18-May-2022 number of released structures: 12082
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NDB ID: DR0011  PDB ID: 1YRJ 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
17AA_A10C11:G37U38_BB0.789-1.53.1470.5775.73839.124-2.847-1.1032.9188.512-0.85639.53
12AA_C4G5:C44G45_BB1.061-2.0163.9098.6216.21820.686-7.5260.8593.34116.023-22.21523.23
15AA_C7C9:G39G42_BB1.93-2.7996.309-10.9617.52384.819-2.746-1.8495.53612.8278.02386.835
16AA_C9A10:U38G39_BB-0.808-1.4133.162-0.77810.29527.078-4.8641.4622.49121.0421.5928.945
18AA_C11C12:G36G37_BB-0.083-2.7582.948-4.37112.97617.865-10.129-0.8160.78535.74112.0422.475
19AA_C12G13:C35G36_BB-0.156-1.3963.173.2118.91236.27-3.2490.6312.7414.024-5.05237.446
115AA_C21G22:C27G28_BB-0.304-2.1813.2361.303-2.420.323-5.0371.4463.441-6.762-3.67120.504
11AA_G3C4:G45C46_BB-0.859-2.6453.3443.787-2.90631.201-4.3012.3153.444-5.364-6.98931.555
13AA_G5U6:U43C44_BB0.569-1.4782.684-15.8421.3524.873-3.128-3.7061.9062.79832.84229.453
110AA_G13G14:C34C35_BB-0.368-2.0663.2573.9998.04528.7-5.481.4532.52515.75-7.8330.045
111AA_G14U15:A33C34_BB0.655-1.3233.030.3364.87127.242-3.821-1.2982.76310.238-0.70627.668
113AA_G19U20:U29C30_BB-0.453-1.7723.4961.1791.22637.715-2.9060.8613.4241.896-1.82237.752
116AA_G22C23:G26C27_BB-0.375-2.2093.1961.8325.65831.807-4.8830.972.74710.212-3.30632.344
14AA_U6C7:G42U43_BB0.025-0.6992.9694.5113.94150.2-1.070.2582.9024.626-5.29550.533
112AA_U15G16:C32A33_BB0.094-1.3253.056-2.6838.88235.404-3.197-0.4782.64414.3044.3236.562
114AA_U20C21:G28U29_BB-0.107-1.6213.216-3.6128.19233.028-3.958-0.3472.74414.0896.21334.187

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.