A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID: UR0057  PDB ID: 1YXP 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
13A_5BU3:A21_A0.389-0.5940.2412.354-21.0983.047
11A_C1:G23_A-0.019-0.130.04610.976-11.0972.472
15A_C5:G19_A0.211-0.191-0.2492.709-11.1774.4
14A_G4:C20_A0.072-0.192-0.079-0.983-13.482.208
17A_G7:C17_A0.341-0.242-0.081-1.529-13.6690.753
12A_U2:A22_A0.144-0.150.1456.813-16.812-0.714
16A_U6:A18_A-0.167-0.1810.124-5.12-11.2569.502
112B_A14:U11_A0.169-0.3420.0918.332-13.239-0.191
115B_A18:U6_B-0.528-0.3220.1522.525-14.43810.168
118B_A21:5BU3_B0.074-0.231-0.315-12.45-15.304-2.156
119B_A22:U2_B0.119-0.108-0.031-10.9-10.794-1.407
111B_C13:G12_A0.304-0.152-0.1568.207-1.2760.043
113B_C15:G10_A0.273-0.264-0.0068.81-6.8881.124
114B_C17:G7_B-0.135-0.103-0.068-3.485-8.74-0.418
117B_C20:G4_B-0.611-0.105-0.1978.054-14.5647.694
18B_G10:C15_A0.095-0.21-0.237-11.05-13.0245.35
110B_G12:C13_A-0.188-0.0960.195-1.342-2.806-4.421
116B_G19:C5_B-0.125-0.293-0.003-3.456-11.0462.446
120B_G23:C1_B-0.130.085-0.212-8.768-10.5161.303
19B_U11:A14_A0.023-0.1870.056-13.661-8.244-3.698

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.