1Z30: Base Pair Morphology Step Parameters

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NDB ID: 1Z30 PDB ID: 1Z30

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	3	AA_C3G4:C15G16_AA	0.265	-1.378	3.462	2.327	15.191	30.902	-4.625	-0.095	2.541	26.55	-4.068	34.429
1	1	AA_G1G2:U17C18_AA	0.585	-1.401	2.883	-7.408	11.445	24.363	-5.008	-2.573	1.806	24.792	16.048	27.868
1	2	AA_G2C3:G16U17_AA	-0.514	-0.854	3.212	0.052	4.174	43.22	-1.547	0.699	3.119	5.651	-0.071	43.411
1	4	AA_G4U5:A14C15_AA	-0.266	-1.438	3.218	-4.607	-0.407	31.484	-2.549	-0.35	3.241	-0.745	8.433	31.814
1	5	AA_U5U6:A13A14_AA	-0.048	-1.371	2.933	2.739	-7.44	29.751	-1.205	0.599	3.158	-14.176	-5.22	30.766
1	6	AA_U6C7:G12A13_AA	0.392	-0.794	3.158	3.885	-0.67	33.864	-1.251	-0.068	3.196	-1.146	-6.641	34.086

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.