1Z31: Base Pair Morphology Parameters

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NDB ID: 1Z31 PDB ID: 1Z31

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	2	A_A258:U298_A	0.18	-0.221	-0.399	-0.231	-12.126	4.806
1	10	A_A269:U287_A	0.597	-0.261	-0.209	13.616	-31.168	2.361
1	8	A_C265:G292_A	0.127	-0.149	-0.348	-2.222	12.643	-2.867
1	11	A_C270:G286_A	0.313	-0.173	0.381	-2.41	-7.513	-2.578
1	1	A_G257:C299_A	-0.306	-0.12	0.057	-19.578	-11.301	-2.196
1	3	A_G259:C297_A	0.274	-0.046	-0.07	-13.917	-1.362	-1.24
1	4	A_G260:C296_A	0.583	-0.12	0.14	-11.216	-15.151	-2.693
1	6	A_G263:C294_A	-0.621	-0.306	-0.003	1.94	-22.878	2.252
1	7	A_G264:C293_A	0.429	-0.123	-0.312	-2.316	-14.418	1.303
1	9	A_G268:C288_A	-0.415	-0.189	0.209	12.201	-11.339	-1.315
1	5	A_U261:A295_A	-0.171	-0.177	0.071	-2.702	-4.693	2.741
1	12	A_U271:G285_A	0.498	-3.279	0.652	-33.904	-0.609	-129.738

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.