1Z31: Base Pair Morphology Step Parameters

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NDB ID: 1Z31 PDB ID: 1Z31

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	2	AA_A258G259:C297U298_AA	0.224	-2.046	3.423	-4.369	28.993	25.342	-5.894	-0.76	0.736	49.461	7.453	38.572
1	9	AA_A269C270:G286U287_AA	-0.112	-1.646	4.018	-7.969	4.568	33.747	-3.57	-1.261	3.7	7.693	13.421	34.939
1	10	AA_C270U271:G285G286_AA	-1.746	-1.675	3.578	22.235	20.364	89.225	-1.54	1.624	2.843	14.172	-15.475	93.155
1	1	AA_G257A258:U298C299_AA	1.658	-0.897	3.486	8.917	-1.859	33.478	-1.181	-1.223	3.831	-3.156	-15.134	34.661
1	3	AA_G259G260:C296C297_AA	-0.807	-0.56	3.644	-1.499	3.598	39.585	-1.287	0.993	3.609	5.297	2.207	39.769
1	4	AA_G260U261:A295C296_AA	1.847	-1.566	2.739	2.137	7.634	25.997	-4.858	-3.506	2.334	16.488	-4.615	27.159
1	6	AA_G263G264:C293C294_AA	-0.534	-1.709	3.517	-4.998	13.074	35.565	-4.27	0.184	2.789	20.454	7.819	38.137
1	7	AA_G264C265:G292C293_AA	-0.402	-2.162	3.588	2.394	-5.099	37.24	-2.597	0.976	3.809	-7.929	-3.723	37.648
1	8	AA_G268A269:U287C288_AA	0.669	-0.664	3.195	5.133	26.981	32.628	-3.491	-0.435	2.149	40.299	-7.667	42.407
1	5	AA_U261G263:C294A295_AA	-1.868	-1.838	2.958	0.487	13.67	28.186	-5.421	3.537	1.857	26.206	-0.933	31.269

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.