A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID: PR0153  PDB ID: 1ZBH 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
13F_C8:G19_F0.7680.03-0.6313.42-21.9154.639
15F_C10:G17_F-0.443-0.043-0.0349.927-10.313.392
11F_G6:C21_F-0.4070.084-1.1395.054-10.574-15.16
12F_G7:C20_F-0.567-0.098-0.135-2.951-14.1721.876
14F_U9:A18_F0.3280.1630.0351.398-4.5318.539
16F_U11:A16_F0.380.251-0.53410.816-7.07215.202
19E_C8:G19_E0.843-0.294-0.3799.425-18.7133.444
111E_C10:G17_E0.148-0.075-0.86917.963-9.8712.251
17E_G6:C21_E0.0960.185-1.4725.408-3.998-24.221
18E_G7:C20_E-0.4610.217-0.152-1.192-12.4227.03
110E_U9:A18_E0.3380.0530.3061.776-2.7546.254
112E_U11:A16_E0.3820.472-0.5194.435-1.77321.05

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.