1ZDH: Base Pair Morphology Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082

Search for released structures

NDB ID: PRV003 PDB ID: 1ZDH

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	2	R_G5:C15_R	-0.391	-0.3	0.242	14.243	-3.984	1.882
1	3	R_G7:C14_R	-1.129	-0.679	-0.02	3.683	0.86	-1.47
1	4	R_G8:C13_R	-0.838	-0.157	0.194	14.01	12.531	4.456
1	1	R_U4:A16_R	-0.582	-0.335	0.135	-1.693	-12.845	-0.195
1	6	S_G5:C15_S	-0.44	-0.547	0.253	7.584	-11.659	-2.194
1	7	S_G7:C14_S	-0.669	0.167	-0.657	-8.737	-4.757	-0.866
1	8	S_G8:C13_S	-0.17	-0.568	0.956	7.163	7.554	3.765
1	5	S_U4:A16_S	-0.169	-0.405	-0.583	2.795	-8.243	0.782

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.