A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID: PRV003  PDB ID: 1ZDH 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12R_G5:C15_R-0.391-0.30.24214.243-3.9841.882
13R_G7:C14_R-1.129-0.679-0.023.6830.86-1.47
14R_G8:C13_R-0.838-0.1570.19414.0112.5314.456
11R_U4:A16_R-0.582-0.3350.135-1.693-12.845-0.195
16S_G5:C15_S-0.44-0.5470.2537.584-11.659-2.194
17S_G7:C14_S-0.6690.167-0.657-8.737-4.757-0.866
18S_G8:C13_S-0.17-0.5680.9567.1637.5543.765
15S_U4:A16_S-0.169-0.405-0.5832.795-8.2430.782

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.