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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID:
PRV003
PDB ID:
1ZDH
 
Base Pair Morphology Step Parameters
CSV Format
Model Number
Step Number
Step Name
Shift
Slide
Rise
Tilt
Roll
Twist
X-Displacement
Y-Displacement
Helical Rise
Inclination
Tip
Helical Twist
1
2
RR_G5G7:C14C15_RR
-0.302
-2.519
3.386
0.659
1.685
28.194
-5.558
0.773
3.225
3.454
-1.351
28.25
1
3
RR_G7G8:C13C14_RR
0.251
-2.192
2.787
-3.759
2.378
35.36
-3.867
-0.861
2.599
3.895
6.159
35.63
1
1
RR_U4G5:C15A16_RR
0.107
-1.214
2.538
-2.263
8.731
33.997
-2.964
-0.424
2.159
14.615
3.788
35.139
1
5
SS_G5G7:C14C15_SS
0.248
-2.466
3.616
-0.394
11.118
32.232
-5.955
-0.486
2.642
19.321
0.685
34.05
1
6
SS_G7G8:C13C14_SS
-0.511
-1.949
2.428
-8.989
2.661
35.13
-3.401
-0.111
2.335
4.315
14.574
36.321
1
4
SS_U4G5:C15A16_SS
0.253
-1.133
3.086
-1.78
6.835
29.921
-3.35
-0.793
2.747
13.01
3.388
30.725
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.