A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-May-2022 number of released structures: 12077
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NDB ID: PRV006  PDB ID: 1ZDI 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11R_A3:U17_R0.059-0.4590.74412.956-17.8682.565
13R_G5:C15_R-0.494-0.4020.35416.419-2.957-0.374
14R_G7:C14_R-0.866-0.6080.2052.056-9.734-1.234
15R_G8:C13_R-0.692-0.1760.1566.6970.7143.501
12R_U4:A16_R-0.265-0.3550.18-1.759-13.4290.463
17S_G5:C15_S-0.403-0.4170.2394.934-12.326-1.944
18S_G7:C14_S-0.6050.075-0.645-9.694-16.392-0.916
19S_G8:C13_S-0.366-0.5770.839.4372.431.925
16S_U4:A16_S0.163-0.435-0.354-0.133-16.098-0.75

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.