A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 19-Jan-2022 number of released structures: 11891
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NDB ID: PDE030  PDB ID: 1ZQD 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12T_DA2:DT6_P0.466-0.241-0.076-6.177-6.775-7.927
15T_DA5:DT3_P0.65-0.5060.2665.914-2.556-1.847
17T_DA7:DT1_P-0.595-0.6760.18412.883-5.993-4.773
11T_DC1:DG7_P0.620.172-1.016-3.627-0.01719.052
16T_DG6:DC2_P-1.61-0.815-0.0658.266-20.266-1.065
13T_DT3:DA5_P-0.417-0.2170.501-6.619-14.2335.234
14T_DT4:DA4_P-0.183-0.5130.115-6.092-7.84212.367

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.