A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 14-Apr-2021 number of released structures: 11277
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NDB ID: PDE031  PDB ID: 1ZQE 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12T_DA2:DT6_P-0.001-0.57-0.188-6.533-6.3974.377
15T_DA5:DT3_P0.548-0.5021.1581.045-9.4530.089
17T_DA7:DT1_P-0.906-0.409-0.0536.452-1.1512.733
11T_DC1:DG7_P1.089-0.233-1.7414.409-1.15715.9
16T_DG6:DC2_P-1.499-0.710.3611.867-11.109-3.773
13T_DT3:DA5_P-0.436-0.1720.4330.141-14.05217.001
14T_DT4:DA4_P-0.525-0.6880.044-3.512-8.7274.084

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.