1ZQE: Base Pair Morphology Step Parameters

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NDB ID: PDE031 PDB ID: 1ZQE

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	2	TT_DA2DT3:DA5DT6_PP	0.608	-0.096	3.306	-0.742	-1.426	33.559	0.069	-1.174	3.293	-2.468	1.284	33.596
1	5	TT_DA5DG6:DC2DT3_PP	0.184	-0.638	3.015	4.61	1.546	16.04	-3.135	2.193	2.879	5.382	-16.048	16.757
1	1	TT_DC1DA2:DT6DG7_PP	-1.135	0.895	3.923	-11.046	9.591	18.421	-2.201	-2.279	3.977	25.391	29.243	23.484
1	6	TT_DG6DA7:DT1DC2_PP	-0.534	0.598	3.694	-3.441	6.826	32.41	-0.273	0.269	3.774	12.021	6.06	33.276
1	3	TT_DT3DT4:DA4DA5_PP	-0.558	-0.248	3.19	0.832	14.627	38.492	-1.885	0.882	2.901	21.271	-1.21	41.086
1	4	TT_DT4DA5:DT3DA4_PP	-0.37	0.046	3.303	-7.3	2.424	39.03	-0.22	-0.323	3.314	3.586	10.799	39.752

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.