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NDB ID: 1AM0  PDB ID: 1AM0 

RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
1AM0|1|A|A|101AM0|1|A|A|9s53
1AM0|1|A|A|101AM0|1|A|C|15
1AM0|1|A|A|101AM0|1|A|G|17ntSS
1AM0|1|A|A|101AM0|1|A|G|8ns33
1AM0|1|A|A|101AM0|1|A|U|16
1AM0|1|A|A|121AM0|1|A|A|12n0BP
1AM0|1|A|A|121AM0|1|A|G|11
1AM0|1|A|A|121AM0|1|A|G|34s350BPh
1AM0|1|A|A|121AM0|1|A|U|16ntWW
1AM0|1|A|A|131AM0|1|A|A|10n6BP
1AM0|1|A|A|131AM0|1|A|A|14s35
1AM0|1|A|A|131AM0|1|A|G|117BPh
1AM0|1|A|A|141AM0|1|A|A|13s53
1AM0|1|A|A|141AM0|1|A|C|15s35
1AM0|1|A|A|141AM0|1|A|G|11n7BP
1AM0|1|A|A|331AM0|1|A|A|33n0BP
1AM0|1|A|A|331AM0|1|A|G|17ncWW
1AM0|1|A|A|331AM0|1|A|G|34s33
1AM0|1|A|A|331AM0|1|A|U|18cWW
1AM0|1|A|A|91AM0|1|A|A|10s35
1AM0|1|A|A|91AM0|1|A|A|90BPh
1AM0|1|A|A|91AM0|1|A|U|16ntSS
1AM0|1|A|C|151AM0|1|A|A|10
1AM0|1|A|C|151AM0|1|A|A|14s53
1AM0|1|A|C|151AM0|1|A|U|16s35
1AM0|1|A|C|351AM0|1|A|A|12n7BP
1AM0|1|A|C|351AM0|1|A|C|350BPh
1AM0|1|A|C|351AM0|1|A|G|11s53
1AM0|1|A|C|351AM0|1|A|G|34
1AM0|1|A|C|351AM0|1|A|G|6cWW
1AM0|1|A|G|111AM0|1|A|A|12
1AM0|1|A|G|111AM0|1|A|C|35s35
1AM0|1|A|G|111AM0|1|A|G|34
1AM0|1|A|G|111AM0|1|A|G|7ntHW
1AM0|1|A|G|171AM0|1|A|A|10ntSS
1AM0|1|A|G|171AM0|1|A|A|33ncWW
1AM0|1|A|G|171AM0|1|A|G|170BPh
1AM0|1|A|G|171AM0|1|A|G|34ncWH
1AM0|1|A|G|171AM0|1|A|U|16s53
1AM0|1|A|G|171AM0|1|A|U|18s35
1AM0|1|A|G|341AM0|1|A|A|12s53
1AM0|1|A|G|341AM0|1|A|A|33s33
1AM0|1|A|G|341AM0|1|A|G|11
1AM0|1|A|G|341AM0|1|A|G|17ncHW
1AM0|1|A|G|341AM0|1|A|G|34n1BP
1AM0|1|A|G|61AM0|1|A|C|35cWW
1AM0|1|A|G|61AM0|1|A|G|60BPh
1AM0|1|A|G|61AM0|1|A|G|7s35
1AM0|1|A|G|71AM0|1|A|G|11ntWH
1AM0|1|A|G|71AM0|1|A|G|6s53
1AM0|1|A|G|71AM0|1|A|G|8s35
1AM0|1|A|G|81AM0|1|A|A|10ns33
1AM0|1|A|G|81AM0|1|A|A|9n0BP
1AM0|1|A|G|81AM0|1|A|G|114BPh
1AM0|1|A|G|81AM0|1|A|G|7s53
1AM0|1|A|G|81AM0|1|A|G|80BPh
1AM0|1|A|U|161AM0|1|A|A|10
1AM0|1|A|U|161AM0|1|A|A|12ntWW
1AM0|1|A|U|161AM0|1|A|A|9ntSS
1AM0|1|A|U|161AM0|1|A|C|15s53
1AM0|1|A|U|161AM0|1|A|G|17s35
1AM0|1|A|U|181AM0|1|A|A|33cWW
1AM0|1|A|U|181AM0|1|A|G|17s53


Base-PairsCount (2)Relative Frequency
cWW21.000
Base-PhosphateCount (8)Relative Frequency
4BPh10.125
7BPh10.125
0BPh60.750
Base-StackingCount (4)Relative Frequency
s3310.250
s5330.750

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)

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