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As of 14-Aug-2019 number of released structures: 10334
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NDB ID: 1ARJ  PDB ID: 1ARJ 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
1ARJ|1|N|A|201ARJ|1|N|C|19s53
1ARJ|1|N|A|201ARJ|1|N|C|41
1ARJ|1|N|A|201ARJ|1|N|G|21s35
1ARJ|1|N|A|201ARJ|1|N|G|43s55
1ARJ|1|N|A|201ARJ|1|N|U|42cWW
1ARJ|1|N|A|221ARJ|1|N|C|41ns55
1ARJ|1|N|A|221ARJ|1|N|G|21s53
1ARJ|1|N|A|221ARJ|1|N|G|26ns35
1ARJ|1|N|A|221ARJ|1|N|U|40cWW
1ARJ|1|N|A|271ARJ|1|N|A|27n0BP
1ARJ|1|N|A|271ARJ|1|N|G|26s53
1ARJ|1|N|A|271ARJ|1|N|G|28s35
1ARJ|1|N|A|271ARJ|1|N|U|23
1ARJ|1|N|A|271ARJ|1|N|U|38cWW
1ARJ|1|N|A|351ARJ|1|N|A|350BPh
1ARJ|1|N|C|191ARJ|1|N|A|20s35
1ARJ|1|N|C|191ARJ|1|N|C|190BPh
1ARJ|1|N|C|191ARJ|1|N|G|18s55
1ARJ|1|N|C|191ARJ|1|N|G|43cWW
1ARJ|1|N|C|241ARJ|1|N|C|240BPh
1ARJ|1|N|C|291ARJ|1|N|C|290BPh
1ARJ|1|N|C|291ARJ|1|N|G|28s53
1ARJ|1|N|C|291ARJ|1|N|G|36cWW
1ARJ|1|N|C|301ARJ|1|N|C|300BPh
1ARJ|1|N|C|301ARJ|1|N|G|34ncSW
1ARJ|1|N|C|371ARJ|1|N|C|37n0BP
1ARJ|1|N|C|371ARJ|1|N|G|28cWW
1ARJ|1|N|C|371ARJ|1|N|G|36s53
1ARJ|1|N|C|371ARJ|1|N|U|38s35
1ARJ|1|N|C|391ARJ|1|N|C|390BPh
1ARJ|1|N|C|391ARJ|1|N|G|26cWW
1ARJ|1|N|C|391ARJ|1|N|U|38s53
1ARJ|1|N|C|391ARJ|1|N|U|40s35
1ARJ|1|N|C|411ARJ|1|N|A|20
1ARJ|1|N|C|411ARJ|1|N|A|22ns55
1ARJ|1|N|C|411ARJ|1|N|C|410BPh
1ARJ|1|N|C|411ARJ|1|N|G|21cWW
1ARJ|1|N|C|411ARJ|1|N|U|40s53
1ARJ|1|N|C|411ARJ|1|N|U|42s35
1ARJ|1|N|C|441ARJ|1|N|C|440BPh
1ARJ|1|N|C|441ARJ|1|N|C|45ncSH
1ARJ|1|N|C|441ARJ|1|N|G|18ncWW
1ARJ|1|N|C|441ARJ|1|N|G|43s33
1ARJ|1|N|C|451ARJ|1|N|C|44ncHS
1ARJ|1|N|C|451ARJ|1|N|G|17s55
1ARJ|1|N|C|451ARJ|1|N|G|18s33
1ARJ|1|N|G|171ARJ|1|N|C|45s55
1ARJ|1|N|G|171ARJ|1|N|G|18s53
1ARJ|1|N|G|181ARJ|1|N|C|19s55
1ARJ|1|N|G|181ARJ|1|N|C|44ncWW
1ARJ|1|N|G|181ARJ|1|N|C|45s33
1ARJ|1|N|G|181ARJ|1|N|G|17s35
1ARJ|1|N|G|211ARJ|1|N|A|20s53
1ARJ|1|N|G|211ARJ|1|N|A|22s35
1ARJ|1|N|G|211ARJ|1|N|C|41cWW
1ARJ|1|N|G|211ARJ|1|N|G|210BPh
1ARJ|1|N|G|211ARJ|1|N|U|42s55
1ARJ|1|N|G|261ARJ|1|N|A|22ns53
1ARJ|1|N|G|261ARJ|1|N|A|27s35
1ARJ|1|N|G|261ARJ|1|N|C|39cWW
1ARJ|1|N|G|261ARJ|1|N|U|23ns35
1ARJ|1|N|G|261ARJ|1|N|U|25ns53
1ARJ|1|N|G|261ARJ|1|N|U|40s55
1ARJ|1|N|G|281ARJ|1|N|A|27s53
1ARJ|1|N|G|281ARJ|1|N|C|29s35
1ARJ|1|N|G|281ARJ|1|N|C|37cWW
1ARJ|1|N|G|281ARJ|1|N|U|38s55
1ARJ|1|N|G|321ARJ|1|N|U|31
1ARJ|1|N|G|331ARJ|1|N|G|32
1ARJ|1|N|G|341ARJ|1|N|C|30ncWS
1ARJ|1|N|G|341ARJ|1|N|G|331BPh
1ARJ|1|N|G|361ARJ|1|N|C|29cWW
1ARJ|1|N|G|361ARJ|1|N|C|37s35
1ARJ|1|N|G|361ARJ|1|N|G|360BPh
1ARJ|1|N|G|431ARJ|1|N|A|20s55
1ARJ|1|N|G|431ARJ|1|N|C|19cWW
1ARJ|1|N|G|431ARJ|1|N|C|44s33
1ARJ|1|N|G|431ARJ|1|N|G|430BPh
1ARJ|1|N|G|431ARJ|1|N|U|42ns53
1ARJ|1|N|U|231ARJ|1|N|A|27
1ARJ|1|N|U|231ARJ|1|N|G|26ns53
1ARJ|1|N|U|231ARJ|1|N|U|230BPh
1ARJ|1|N|U|251ARJ|1|N|G|26ns35
1ARJ|1|N|U|251ARJ|1|N|U|250BPh
1ARJ|1|N|U|311ARJ|1|N|C|30
1ARJ|1|N|U|311ARJ|1|N|U|310BPh
1ARJ|1|N|U|381ARJ|1|N|A|27cWW
1ARJ|1|N|U|381ARJ|1|N|C|37s53
1ARJ|1|N|U|381ARJ|1|N|C|39s35
1ARJ|1|N|U|381ARJ|1|N|G|28s55
1ARJ|1|N|U|381ARJ|1|N|U|380BPh
1ARJ|1|N|U|401ARJ|1|N|A|22cWW
1ARJ|1|N|U|401ARJ|1|N|C|39s53n9BP
1ARJ|1|N|U|401ARJ|1|N|C|41s35
1ARJ|1|N|U|401ARJ|1|N|G|26s55
1ARJ|1|N|U|421ARJ|1|N|A|20cWW
1ARJ|1|N|U|421ARJ|1|N|C|41s53
1ARJ|1|N|U|421ARJ|1|N|G|21s55
1ARJ|1|N|U|421ARJ|1|N|G|43ns35
1ARJ|1|N|U|421ARJ|1|N|U|420BPh


Base-PairsCount (8)Relative Frequency
cWW81.000
Base-PhosphateCount (17)Relative Frequency
1BPh10.059
0BPh160.941
Base-StackingCount (16)Relative Frequency
s3320.125
s5380.500
s5560.375

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)