A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-Sep-2019 number of released structures: 10387
Search for released structures

NDB ID: 1BN0  PDB ID: 1BN0 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
1BN0|1|A|A|111BN0|1|A|G|13s35
1BN0|1|A|A|111BN0|1|A|G|9
1BN0|1|A|A|161BN0|1|A|A|6s55
1BN0|1|A|A|161BN0|1|A|G|17s35
1BN0|1|A|A|161BN0|1|A|U|15s53
1BN0|1|A|A|161BN0|1|A|U|5ncWW
1BN0|1|A|A|31BN0|1|A|A|30BPh
1BN0|1|A|A|31BN0|1|A|C|4s35
1BN0|1|A|A|31BN0|1|A|G|2s53
1BN0|1|A|A|31BN0|1|A|U|18cWW
1BN0|1|A|A|61BN0|1|A|A|16s55
1BN0|1|A|A|61BN0|1|A|A|60BPh
1BN0|1|A|A|61BN0|1|A|G|7s35
1BN0|1|A|A|61BN0|1|A|U|15cWW
1BN0|1|A|A|61BN0|1|A|U|5s53
1BN0|1|A|C|141BN0|1|A|C|140BPh
1BN0|1|A|C|141BN0|1|A|G|13s53
1BN0|1|A|C|141BN0|1|A|G|7cWW
1BN0|1|A|C|141BN0|1|A|U|15s35
1BN0|1|A|C|191BN0|1|A|C|190BPh
1BN0|1|A|C|191BN0|1|A|G|2cWW
1BN0|1|A|C|191BN0|1|A|U|18s53n9BP
1BN0|1|A|C|201BN0|1|A|C|200BPh
1BN0|1|A|C|201BN0|1|A|G|1cWW
1BN0|1|A|C|41BN0|1|A|A|3s53
1BN0|1|A|C|41BN0|1|A|C|40BPh
1BN0|1|A|C|41BN0|1|A|G|17cWW
1BN0|1|A|C|41BN0|1|A|U|5ns35
1BN0|1|A|C|81BN0|1|A|C|80BPh
1BN0|1|A|C|81BN0|1|A|G|13cWW
1BN0|1|A|C|81BN0|1|A|G|7s53
1BN0|1|A|C|81BN0|1|A|G|9ns35
1BN0|1|A|G|11BN0|1|A|C|20cWW
1BN0|1|A|G|11BN0|1|A|G|2s35
1BN0|1|A|G|101BN0|1|A|G|10
1BN0|1|A|G|101BN0|1|A|G|9s53
1BN0|1|A|G|131BN0|1|A|A|11s53
1BN0|1|A|G|131BN0|1|A|C|14s35
1BN0|1|A|G|131BN0|1|A|C|8cWW
1BN0|1|A|G|131BN0|1|A|G|130BPh
1BN0|1|A|G|131BN0|1|A|G|9
1BN0|1|A|G|171BN0|1|A|A|16s53
1BN0|1|A|G|171BN0|1|A|C|4cWW
1BN0|1|A|G|171BN0|1|A|G|170BPh
1BN0|1|A|G|171BN0|1|A|U|18s35
1BN0|1|A|G|171BN0|1|A|U|5s55
1BN0|1|A|G|21BN0|1|A|A|3s35
1BN0|1|A|G|21BN0|1|A|C|19cWW
1BN0|1|A|G|21BN0|1|A|G|1s53
1BN0|1|A|G|21BN0|1|A|G|20BPh
1BN0|1|A|G|71BN0|1|A|A|6s53
1BN0|1|A|G|71BN0|1|A|C|14cWW
1BN0|1|A|G|71BN0|1|A|C|8s35
1BN0|1|A|G|71BN0|1|A|G|70BPh
1BN0|1|A|G|71BN0|1|A|U|15ns55
1BN0|1|A|G|91BN0|1|A|A|11
1BN0|1|A|G|91BN0|1|A|C|8ns53
1BN0|1|A|G|91BN0|1|A|G|10s35
1BN0|1|A|G|91BN0|1|A|G|13
1BN0|1|A|U|151BN0|1|A|A|16s35
1BN0|1|A|U|151BN0|1|A|A|6cWW
1BN0|1|A|U|151BN0|1|A|C|14s53
1BN0|1|A|U|151BN0|1|A|G|7ns55
1BN0|1|A|U|151BN0|1|A|U|150BPh
1BN0|1|A|U|181BN0|1|A|A|3cWW
1BN0|1|A|U|181BN0|1|A|C|19s35
1BN0|1|A|U|181BN0|1|A|G|17s53
1BN0|1|A|U|181BN0|1|A|U|18n9BP
1BN0|1|A|U|51BN0|1|A|A|16ncWW
1BN0|1|A|U|51BN0|1|A|A|6s35
1BN0|1|A|U|51BN0|1|A|C|4ns53
1BN0|1|A|U|51BN0|1|A|G|17s55
1BN0|1|A|U|51BN0|1|A|U|50BPh


Base-PairsCount (7)Relative Frequency
cWW71.000
Base-PhosphateCount (13)Relative Frequency
0BPh131.000
Base-StackingCount (9)Relative Frequency
s5370.778
s5520.222

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)