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As of 14-Aug-2019 number of released structures: 10334
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NDB ID: 1BYJ  PDB ID: 1BYJ 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
1BYJ|1|A|A|201BYJ|1|A|A|200BPh
1BYJ|1|A|A|201BYJ|1|A|A|21ns35
1BYJ|1|A|A|201BYJ|1|A|G|19
1BYJ|1|A|A|211BYJ|1|A|A|20ns53
1BYJ|1|A|A|211BYJ|1|A|A|210BPh
1BYJ|1|A|A|211BYJ|1|A|C|8ncWS
1BYJ|1|A|A|71BYJ|1|A|A|70BPh
1BYJ|1|A|A|71BYJ|1|A|C|6s53
1BYJ|1|A|A|71BYJ|1|A|C|8s35
1BYJ|1|A|A|71BYJ|1|A|G|19ns33
1BYJ|1|A|A|71BYJ|1|A|G|22s55
1BYJ|1|A|A|91BYJ|1|A|A|90BPh
1BYJ|1|A|A|91BYJ|1|A|C|10s35
1BYJ|1|A|A|91BYJ|1|A|C|8s53
1BYJ|1|A|A|91BYJ|1|A|G|19s55
1BYJ|1|A|A|91BYJ|1|A|U|18cWW
1BYJ|1|A|C|101BYJ|1|A|A|9s53
1BYJ|1|A|C|101BYJ|1|A|C|100BPh
1BYJ|1|A|C|101BYJ|1|A|C|11s35
1BYJ|1|A|C|101BYJ|1|A|G|17cWW
1BYJ|1|A|C|111BYJ|1|A|C|10s53
1BYJ|1|A|C|111BYJ|1|A|C|110BPh
1BYJ|1|A|C|111BYJ|1|A|G|15ntWW
1BYJ|1|A|C|111BYJ|1|A|G|16cWW
1BYJ|1|A|C|111BYJ|1|A|G|17ns55
1BYJ|1|A|C|111BYJ|1|A|U|12s35
1BYJ|1|A|C|141BYJ|1|A|C|14n0BP
1BYJ|1|A|C|141BYJ|1|A|G|15ns53
1BYJ|1|A|C|141BYJ|1|A|U|12s53
1BYJ|1|A|C|141BYJ|1|A|U|139BPh
1BYJ|1|A|C|241BYJ|1|A|C|240BPh
1BYJ|1|A|C|241BYJ|1|A|G|25ns35
1BYJ|1|A|C|241BYJ|1|A|G|4cWW
1BYJ|1|A|C|241BYJ|1|A|U|23s53
1BYJ|1|A|C|261BYJ|1|A|C|260BPh
1BYJ|1|A|C|261BYJ|1|A|C|27s35
1BYJ|1|A|C|261BYJ|1|A|G|2cWW
1BYJ|1|A|C|261BYJ|1|A|G|25s53
1BYJ|1|A|C|271BYJ|1|A|C|26s53
1BYJ|1|A|C|271BYJ|1|A|C|270BPh
1BYJ|1|A|C|271BYJ|1|A|G|1cWW
1BYJ|1|A|C|271BYJ|1|A|G|2ns55
1BYJ|1|A|C|31BYJ|1|A|C|30BPh
1BYJ|1|A|C|31BYJ|1|A|G|2s53
1BYJ|1|A|C|31BYJ|1|A|G|25cWW
1BYJ|1|A|C|31BYJ|1|A|G|4ns35
1BYJ|1|A|C|61BYJ|1|A|A|7s35
1BYJ|1|A|C|61BYJ|1|A|C|60BPh
1BYJ|1|A|C|61BYJ|1|A|G|22cWW
1BYJ|1|A|C|61BYJ|1|A|U|5s53
1BYJ|1|A|C|81BYJ|1|A|A|21ncSW
1BYJ|1|A|C|81BYJ|1|A|A|7s53
1BYJ|1|A|C|81BYJ|1|A|A|9s35
1BYJ|1|A|C|81BYJ|1|A|C|80BPh
1BYJ|1|A|C|81BYJ|1|A|G|19cWW
1BYJ|1|A|G|11BYJ|1|A|C|27cWW
1BYJ|1|A|G|11BYJ|1|A|G|10BPh
1BYJ|1|A|G|11BYJ|1|A|G|2s35
1BYJ|1|A|G|151BYJ|1|A|C|11ntWW
1BYJ|1|A|G|151BYJ|1|A|C|14ns35
1BYJ|1|A|G|151BYJ|1|A|G|16s55
1BYJ|1|A|G|151BYJ|1|A|U|12tWS
1BYJ|1|A|G|151BYJ|1|A|U|13
1BYJ|1|A|G|161BYJ|1|A|C|11cWW
1BYJ|1|A|G|161BYJ|1|A|G|15s55
1BYJ|1|A|G|161BYJ|1|A|G|160BPh
1BYJ|1|A|G|161BYJ|1|A|G|17s35
1BYJ|1|A|G|171BYJ|1|A|C|10cWW
1BYJ|1|A|G|171BYJ|1|A|C|11ns55
1BYJ|1|A|G|171BYJ|1|A|G|16s53
1BYJ|1|A|G|171BYJ|1|A|G|170BPh
1BYJ|1|A|G|171BYJ|1|A|U|18s35
1BYJ|1|A|G|191BYJ|1|A|A|20
1BYJ|1|A|G|191BYJ|1|A|A|7ns33
1BYJ|1|A|G|191BYJ|1|A|A|9s55
1BYJ|1|A|G|191BYJ|1|A|C|8cWW
1BYJ|1|A|G|191BYJ|1|A|G|190BPh
1BYJ|1|A|G|191BYJ|1|A|U|18s53
1BYJ|1|A|G|21BYJ|1|A|C|26cWW
1BYJ|1|A|G|21BYJ|1|A|C|27ns55
1BYJ|1|A|G|21BYJ|1|A|C|3s35
1BYJ|1|A|G|21BYJ|1|A|G|1s53
1BYJ|1|A|G|21BYJ|1|A|G|20BPh
1BYJ|1|A|G|221BYJ|1|A|A|7s55
1BYJ|1|A|G|221BYJ|1|A|C|6cWW
1BYJ|1|A|G|221BYJ|1|A|G|22n0BP
1BYJ|1|A|G|221BYJ|1|A|U|23s35
1BYJ|1|A|G|251BYJ|1|A|C|24ns53
1BYJ|1|A|G|251BYJ|1|A|C|26s35
1BYJ|1|A|G|251BYJ|1|A|C|3cWW
1BYJ|1|A|G|251BYJ|1|A|G|250BPh
1BYJ|1|A|G|251BYJ|1|A|G|4s55
1BYJ|1|A|G|41BYJ|1|A|C|24cWW
1BYJ|1|A|G|41BYJ|1|A|C|3ns53
1BYJ|1|A|G|41BYJ|1|A|G|25s55
1BYJ|1|A|G|41BYJ|1|A|G|40BPh
1BYJ|1|A|G|41BYJ|1|A|U|5s35
1BYJ|1|A|U|121BYJ|1|A|C|11s53
1BYJ|1|A|U|121BYJ|1|A|C|14s35
1BYJ|1|A|U|121BYJ|1|A|G|15tSW
1BYJ|1|A|U|121BYJ|1|A|U|120BPh
1BYJ|1|A|U|131BYJ|1|A|G|15
1BYJ|1|A|U|131BYJ|1|A|U|12
1BYJ|1|A|U|131BYJ|1|A|U|130BPh
1BYJ|1|A|U|181BYJ|1|A|A|9cWW
1BYJ|1|A|U|181BYJ|1|A|G|17s53
1BYJ|1|A|U|181BYJ|1|A|G|19s35
1BYJ|1|A|U|181BYJ|1|A|U|180BPh
1BYJ|1|A|U|231BYJ|1|A|C|24s35
1BYJ|1|A|U|231BYJ|1|A|G|22s53
1BYJ|1|A|U|231BYJ|1|A|U|230BPh
1BYJ|1|A|U|231BYJ|1|A|U|5ncWW
1BYJ|1|A|U|51BYJ|1|A|C|6s35
1BYJ|1|A|U|51BYJ|1|A|G|4s53
1BYJ|1|A|U|51BYJ|1|A|U|23ncWW
1BYJ|1|A|U|51BYJ|1|A|U|50BPh


Base-PairsCount (10)Relative Frequency
cWW90.900
tWS10.100
Base-PhosphateCount (25)Relative Frequency
9BPh10.040
0BPh240.960
Base-StackingCount (12)Relative Frequency
s5380.667
s5540.333

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)