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NDB ID: 1C0O  PDB ID: 1C0O 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
1C0O|1|A|C|131C0O|1|A|C|130BPh
1C0O|1|A|C|131C0O|1|A|C|14s35
1C0O|1|A|C|131C0O|1|A|G|2cWW
1C0O|1|A|C|131C0O|1|A|G|3s55
1C0O|1|A|C|131C0O|1|A|U|12s53
1C0O|1|A|C|141C0O|1|A|C|13s53
1C0O|1|A|C|141C0O|1|A|C|140BPh
1C0O|1|A|C|141C0O|1|A|G|1cWW
1C0O|1|A|C|51C0O|1|A|C|50BPh
1C0O|1|A|C|51C0O|1|A|G|10cWW
1C0O|1|A|C|51C0O|1|A|G|11s55
1C0O|1|A|C|51C0O|1|A|U|4s53
1C0O|1|A|C|51C0O|1|A|U|6s35
1C0O|1|A|C|81C0O|1|A|C|80BPh
1C0O|1|A|C|81C0O|1|A|U|6s53
1C0O|1|A|C|81C0O|1|A|U|77BPh
1C0O|1|A|G|11C0O|1|A|C|14cWW
1C0O|1|A|G|11C0O|1|A|G|10BPh
1C0O|1|A|G|11C0O|1|A|G|2s35
1C0O|1|A|G|101C0O|1|A|C|5cWW
1C0O|1|A|G|101C0O|1|A|G|100BPh
1C0O|1|A|G|101C0O|1|A|G|11s35
1C0O|1|A|G|101C0O|1|A|G|9s55
1C0O|1|A|G|101C0O|1|A|U|6ns55
1C0O|1|A|G|111C0O|1|A|C|5s55
1C0O|1|A|G|111C0O|1|A|G|10s53
1C0O|1|A|G|111C0O|1|A|G|110BPh
1C0O|1|A|G|111C0O|1|A|U|12s35
1C0O|1|A|G|111C0O|1|A|U|4cWW
1C0O|1|A|G|21C0O|1|A|C|13cWW
1C0O|1|A|G|21C0O|1|A|G|1s53
1C0O|1|A|G|21C0O|1|A|G|20BPh
1C0O|1|A|G|21C0O|1|A|G|3s35
1C0O|1|A|G|31C0O|1|A|C|13s55
1C0O|1|A|G|31C0O|1|A|G|2s53
1C0O|1|A|G|31C0O|1|A|G|30BPh
1C0O|1|A|G|31C0O|1|A|U|12cWW
1C0O|1|A|G|31C0O|1|A|U|4s35
1C0O|1|A|G|91C0O|1|A|G|10s551BPh
1C0O|1|A|G|91C0O|1|A|U|6tWS
1C0O|1|A|G|91C0O|1|A|U|7ns33
1C0O|1|A|U|121C0O|1|A|C|13s35
1C0O|1|A|U|121C0O|1|A|G|11s53
1C0O|1|A|U|121C0O|1|A|G|3cWW
1C0O|1|A|U|121C0O|1|A|U|120BPh
1C0O|1|A|U|41C0O|1|A|C|5s35
1C0O|1|A|U|41C0O|1|A|G|11cWW
1C0O|1|A|U|41C0O|1|A|G|3s53
1C0O|1|A|U|41C0O|1|A|U|40BPh
1C0O|1|A|U|61C0O|1|A|C|5s53
1C0O|1|A|U|61C0O|1|A|C|8s35
1C0O|1|A|U|61C0O|1|A|G|10ns55
1C0O|1|A|U|61C0O|1|A|G|9tSW
1C0O|1|A|U|61C0O|1|A|U|60BPh
1C0O|1|A|U|71C0O|1|A|G|9ns33
1C0O|1|A|U|71C0O|1|A|U|70BPh


Base-PairsCount (6)Relative Frequency
cWW50.833
tWS10.167
Base-PhosphateCount (15)Relative Frequency
1BPh10.067
7BPh10.067
0BPh130.867
Base-StackingCount (6)Relative Frequency
s5330.500
s5530.500

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)