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NDB ID: 1C2Q  PDB ID: 1C2Q 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
1C2Q|1|B|A|111C2Q|1|B|A|110BPh
1C2Q|1|B|A|111C2Q|1|B|G|10s53
1C2Q|1|B|A|111C2Q|1|B|G|12s35
1C2Q|1|B|A|141C2Q|1|B|A|140BPh
1C2Q|1|B|A|141C2Q|1|B|C|13s53
1C2Q|1|B|A|141C2Q|1|B|C|15s35
1C2Q|1|B|A|171C2Q|1|B|A|170BPh
1C2Q|1|B|A|171C2Q|1|B|C|16s53
1C2Q|1|B|A|171C2Q|1|B|U|18s35
1C2Q|1|B|C|131C2Q|1|B|A|14s35
1C2Q|1|B|C|131C2Q|1|B|C|130BPh
1C2Q|1|B|C|131C2Q|1|B|G|12s53
1C2Q|1|B|C|151C2Q|1|B|A|14s53
1C2Q|1|B|C|151C2Q|1|B|C|150BPh
1C2Q|1|B|C|151C2Q|1|B|C|16s35
1C2Q|1|B|C|161C2Q|1|B|A|17s35
1C2Q|1|B|C|161C2Q|1|B|C|15s53
1C2Q|1|B|C|161C2Q|1|B|C|160BPh
1C2Q|1|B|G|101C2Q|1|B|A|11s35
1C2Q|1|B|G|121C2Q|1|B|A|11s53
1C2Q|1|B|G|121C2Q|1|B|C|13s35
1C2Q|1|B|G|121C2Q|1|B|G|120BPh
1C2Q|1|B|U|181C2Q|1|B|A|17s53
1C2Q|1|B|U|181C2Q|1|B|U|180BPh


Base-PairsCount (0)Relative Frequency
Base-PhosphateCount (8)Relative Frequency
0BPh81.000
Base-StackingCount (4)Relative Frequency
s5341.000

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)