A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 21-Aug-2019 number of released structures: 10343
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NDB ID: AHJ015  PDB ID: 1D96 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
1D96|1|A|C|21D96|1|A|C|20BPh
1D96|1|A|C|21D96|1|A|G|1s53
1D96|1|A|C|21D96|1|A|G|3s35
1D96|1|A|G|11D96|1|A|C|2s35
1D96|1|A|G|11D96|1|A|G|1n0BP
1D96|1|A|G|31D96|1|A|C|2s53
1D96|1|A|G|31D96|1|A|G|30BPh
1D96|1|B|C|121D96|1|B|C|120BPh
1D96|1|B|C|121D96|1|B|G|11s53
1D96|1|B|C|121D96|1|B|G|13s35
1D96|1|B|G|111D96|1|B|C|12s35
1D96|1|B|G|111D96|1|B|G|110BPh
1D96|1|B|G|131D96|1|B|C|12s53
1D96|1|B|G|131D96|1|B|G|130BPh


Base-PairsCount (0)Relative Frequency
Base-PhosphateCount (5)Relative Frequency
0BPh51.000
Base-StackingCount (2)Relative Frequency
s5321.000

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)