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NDB ID: PR0017  PDB ID: 1DDL 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
1DDL|1|D|U|1||||P_11DDL|1|D|U|1||||P_1n0BP
1DDL|1|D|U|1||||P_11DDL|1|D|U|2||||P_10BPh
1DDL|1|D|U|1||||P_11DDL|1|D|U|2||||P_P0BPh
1DDL|1|D|U|1||||P_11DDL|1|D|U|3||||P_1
1DDL|1|D|U|1||||P_11DDL|1|D|U|3||||P_P
1DDL|1|D|U|1||||P_P1DDL|1|D|U|1||||P_Pn0BP
1DDL|1|D|U|1||||P_P1DDL|1|D|U|2||||P_10BPh
1DDL|1|D|U|1||||P_P1DDL|1|D|U|2||||P_P0BPh
1DDL|1|D|U|1||||P_P1DDL|1|D|U|3||||P_P
1DDL|1|D|U|3||||P_11DDL|1|D|U|1||||P_1
1DDL|1|D|U|3||||P_11DDL|1|D|U|3||||P_1n0BP
1DDL|1|D|U|3||||P_P1DDL|1|D|U|1||||P_1
1DDL|1|D|U|3||||P_P1DDL|1|D|U|1||||P_P
1DDL|1|D|U|3||||P_P1DDL|1|D|U|3||||P_Pn0BP
1DDL|1|D|U|3||||P_P1DDL|1|D|U|4||||P_1
1DDL|1|D|U|4||||P_11DDL|1|D|U|3||||P_P
1DDL|1|D|U|4||||P_11DDL|1|D|U|4||||P_1n0BP
1DDL|1|D|U|4||||P_P1DDL|1|D|U|4||||P_Pn0BP
1DDL|1|D|U|5||||P_11DDL|1|D|U|4||||P_1n9BP
1DDL|1|D|U|5||||P_11DDL|1|D|U|4||||P_Pn9BP
1DDL|1|D|U|5||||P_11DDL|1|D|U|5||||P_10BPh
1DDL|1|D|U|5||||P_11DDL|1|D|U|6||||P_1s35
1DDL|1|D|U|5||||P_11DDL|1|D|U|6||||P_Ps35
1DDL|1|D|U|5||||P_P1DDL|1|D|U|4||||P_1n9BP
1DDL|1|D|U|5||||P_P1DDL|1|D|U|4||||P_Pn9BP
1DDL|1|D|U|5||||P_P1DDL|1|D|U|5||||P_P0BPh
1DDL|1|D|U|5||||P_P1DDL|1|D|U|6||||P_1s35
1DDL|1|D|U|5||||P_P1DDL|1|D|U|6||||P_Ps35
1DDL|1|D|U|6||||P_11DDL|1|D|U|5||||P_1s53
1DDL|1|D|U|6||||P_11DDL|1|D|U|5||||P_Ps53
1DDL|1|D|U|6||||P_11DDL|1|D|U|6||||P_10BPh
1DDL|1|D|U|6||||P_P1DDL|1|D|U|5||||P_1s53
1DDL|1|D|U|6||||P_P1DDL|1|D|U|5||||P_Ps53
1DDL|1|D|U|6||||P_P1DDL|1|D|U|6||||P_P0BPh
1DDL|1|E|U|1||||P_11DDL|1|E|U|2||||P_1n0BP
1DDL|1|E|U|1||||P_11DDL|1|E|U|2||||P_Pn0BP
1DDL|1|E|U|1||||P_P1DDL|1|E|U|2||||P_1n0BP
1DDL|1|E|U|1||||P_P1DDL|1|E|U|2||||P_Pn0BP


Base-PairsCount (0)Relative Frequency
Base-PhosphateCount (8)Relative Frequency
0BPh81.000
Base-StackingCount (0)Relative Frequency

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)