A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-May-2022 number of released structures: 12077
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NDB ID: AH0008  PDB ID: 1DNT 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
1DNT|1|A|C|21DNT|1|A|C|20BPh
1DNT|1|A|C|21DNT|1|A|G|1s53
1DNT|1|A|G|11DNT|1|A|C|2s35
1DNT|1|A|G|11DNT|1|A|G|1n0BP
1DNT|1|B|C|121DNT|1|B|C|120BPh
1DNT|1|B|C|121DNT|1|B|G|11s53
1DNT|1|B|G|111DNT|1|B|C|12s35
1DNT|1|B|G|111DNT|1|B|G|110BPh


Base-PairsCount (0)Relative Frequency
Base-PhosphateCount (3)Relative Frequency
0BPh31.000
Base-StackingCount (2)Relative Frequency
s5321.000

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)