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NDB ID: 1F6U  PDB ID: 1F6U 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
1F6U|1|B|A|2051F6U|1|B|A|2050BPh
1F6U|1|B|A|2051F6U|1|B|A|215ncWW
1F6U|1|B|A|2051F6U|1|B|C|206s35
1F6U|1|B|A|2051F6U|1|B|G|204s53
1F6U|1|B|A|2051F6U|1|B|G|213ns33
1F6U|1|B|A|2051F6U|1|B|U|214tHS
1F6U|1|B|A|2121F6U|1|B|G|208s55
1F6U|1|B|A|2121F6U|1|B|G|213s35
1F6U|1|B|A|2121F6U|1|B|U|207cWW
1F6U|1|B|A|2121F6U|1|B|U|210ncSS
1F6U|1|B|A|2151F6U|1|B|A|205ncWW
1F6U|1|B|A|2151F6U|1|B|A|2150BPh
1F6U|1|B|A|2151F6U|1|B|C|216s35
1F6U|1|B|A|2151F6U|1|B|G|204
1F6U|1|B|A|2151F6U|1|B|U|214cHS
1F6U|1|B|C|2031F6U|1|B|C|203n0BP
1F6U|1|B|C|2031F6U|1|B|G|202s53
1F6U|1|B|C|2031F6U|1|B|G|204s35
1F6U|1|B|C|2031F6U|1|B|G|217cWW
1F6U|1|B|C|2031F6U|1|B|U|214ns33
1F6U|1|B|C|2061F6U|1|B|A|205s53
1F6U|1|B|C|2061F6U|1|B|C|2060BPh
1F6U|1|B|C|2061F6U|1|B|G|213cWW
1F6U|1|B|C|2061F6U|1|B|U|207s35
1F6U|1|B|C|2161F6U|1|B|A|215s53
1F6U|1|B|C|2161F6U|1|B|C|2160BPh
1F6U|1|B|C|2161F6U|1|B|G|204cWW
1F6U|1|B|C|2161F6U|1|B|G|217s35
1F6U|1|B|C|2161F6U|1|B|U|214ntWS
1F6U|1|B|C|2181F6U|1|B|C|2180BPh
1F6U|1|B|C|2181F6U|1|B|C|219s35
1F6U|1|B|C|2181F6U|1|B|G|202cWW
1F6U|1|B|C|2181F6U|1|B|G|217s53
1F6U|1|B|C|2191F6U|1|B|C|218s53
1F6U|1|B|C|2191F6U|1|B|C|2190BPh
1F6U|1|B|G|2021F6U|1|B|C|203s35
1F6U|1|B|G|2021F6U|1|B|C|218cWW
1F6U|1|B|G|2021F6U|1|B|G|202n0BP
1F6U|1|B|G|2021F6U|1|B|G|217ns33
1F6U|1|B|G|2041F6U|1|B|A|205s35
1F6U|1|B|G|2041F6U|1|B|A|215
1F6U|1|B|G|2041F6U|1|B|C|203s53
1F6U|1|B|G|2041F6U|1|B|C|216cWW
1F6U|1|B|G|2041F6U|1|B|G|204n0BP
1F6U|1|B|G|2041F6U|1|B|G|217ns55
1F6U|1|B|G|2041F6U|1|B|U|214ncWW
1F6U|1|B|G|2081F6U|1|B|A|212s55
1F6U|1|B|G|2081F6U|1|B|G|2080BPh
1F6U|1|B|G|2081F6U|1|B|U|207s53
1F6U|1|B|G|2091F6U|1|B|U|210ncSH
1F6U|1|B|G|2131F6U|1|B|A|205ns33
1F6U|1|B|G|2131F6U|1|B|A|212s53
1F6U|1|B|G|2131F6U|1|B|C|206cWW
1F6U|1|B|G|2131F6U|1|B|G|213n0BP
1F6U|1|B|G|2131F6U|1|B|U|214ns35
1F6U|1|B|G|2171F6U|1|B|C|203cWW
1F6U|1|B|G|2171F6U|1|B|C|216s53
1F6U|1|B|G|2171F6U|1|B|C|218s35
1F6U|1|B|G|2171F6U|1|B|G|202ns33
1F6U|1|B|G|2171F6U|1|B|G|204ns55
1F6U|1|B|G|2171F6U|1|B|G|2170BPh
1F6U|1|B|U|2071F6U|1|B|A|212cWW
1F6U|1|B|U|2071F6U|1|B|C|206s53
1F6U|1|B|U|2071F6U|1|B|G|208s35
1F6U|1|B|U|2071F6U|1|B|U|2070BPh
1F6U|1|B|U|2101F6U|1|B|A|212ncSS
1F6U|1|B|U|2101F6U|1|B|G|209ncHS
1F6U|1|B|U|2101F6U|1|B|U|2100BPh
1F6U|1|B|U|2141F6U|1|B|A|205tSH
1F6U|1|B|U|2141F6U|1|B|A|215cSH
1F6U|1|B|U|2141F6U|1|B|C|203ns33
1F6U|1|B|U|2141F6U|1|B|C|216ntSW
1F6U|1|B|U|2141F6U|1|B|G|204ncWW
1F6U|1|B|U|2141F6U|1|B|G|213ns53
1F6U|1|B|U|2141F6U|1|B|U|2140BPh


Base-PairsCount (7)Relative Frequency
cWW50.714
cHS10.143
tHS10.143
Base-PhosphateCount (11)Relative Frequency
0BPh111.000
Base-StackingCount (5)Relative Frequency
s5340.800
s5510.200

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)