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As of 11-Dec-2019 number of released structures: 10507
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NDB ID: 1F79  PDB ID: 1F79 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
1F79|1|A|A|181F79|1|A|A|180BPh
1F79|1|A|A|181F79|1|A|C|12ns55
1F79|1|A|A|181F79|1|A|C|19s35
1F79|1|A|A|181F79|1|A|G|17s53
1F79|1|A|A|181F79|1|A|U|11cWW
1F79|1|A|A|31F79|1|A|A|30BPh
1F79|1|A|A|31F79|1|A|A|4s35
1F79|1|A|A|31F79|1|A|G|2s53
1F79|1|A|A|31F79|1|A|U|25cWW
1F79|1|A|A|41F79|1|A|A|3s53
1F79|1|A|A|41F79|1|A|A|40BPh
1F79|1|A|A|41F79|1|A|G|5ns35
1F79|1|A|A|41F79|1|A|U|24cWW
1F79|1|A|C|121F79|1|A|A|18ns55
1F79|1|A|C|121F79|1|A|C|120BPh
1F79|1|A|C|121F79|1|A|G|17cWW
1F79|1|A|C|121F79|1|A|U|11s53
1F79|1|A|C|121F79|1|A|U|13s35
1F79|1|A|C|151F79|1|A|C|15n0BP
1F79|1|A|C|151F79|1|A|G|16ns53
1F79|1|A|C|151F79|1|A|U|149BPh
1F79|1|A|C|191F79|1|A|A|18s53
1F79|1|A|C|191F79|1|A|C|190BPh
1F79|1|A|C|191F79|1|A|G|10cWW
1F79|1|A|C|201F79|1|A|C|19
1F79|1|A|C|201F79|1|A|C|200BPh
1F79|1|A|C|201F79|1|A|G|10ns55
1F79|1|A|C|201F79|1|A|G|21s35
1F79|1|A|C|201F79|1|A|G|9cWW
1F79|1|A|C|231F79|1|A|C|230BPh
1F79|1|A|C|231F79|1|A|G|22s53
1F79|1|A|C|231F79|1|A|G|5cWW
1F79|1|A|C|231F79|1|A|U|24s35
1F79|1|A|C|261F79|1|A|C|260BPh
1F79|1|A|C|261F79|1|A|C|27s35
1F79|1|A|C|261F79|1|A|G|2cWW
1F79|1|A|C|261F79|1|A|U|25s53
1F79|1|A|C|271F79|1|A|C|26s53
1F79|1|A|C|271F79|1|A|C|27n0BP
1F79|1|A|C|271F79|1|A|G|1ncWW
1F79|1|A|C|81F79|1|A|C|8n0BP
1F79|1|A|C|81F79|1|A|G|21ncWW
1F79|1|A|C|81F79|1|A|G|9s35
1F79|1|A|C|81F79|1|A|U|6s53
1F79|1|A|G|11F79|1|A|C|27ncWW
1F79|1|A|G|11F79|1|A|G|1n0BP
1F79|1|A|G|11F79|1|A|G|2ns35
1F79|1|A|G|101F79|1|A|C|19cWW
1F79|1|A|G|101F79|1|A|C|20ns55
1F79|1|A|G|101F79|1|A|G|100BPh
1F79|1|A|G|101F79|1|A|G|9s53
1F79|1|A|G|101F79|1|A|U|11s35
1F79|1|A|G|161F79|1|A|C|15ns35
1F79|1|A|G|161F79|1|A|G|16n1BP
1F79|1|A|G|161F79|1|A|G|17s55
1F79|1|A|G|161F79|1|A|U|13tWS
1F79|1|A|G|161F79|1|A|U|14s33
1F79|1|A|G|171F79|1|A|A|18s35
1F79|1|A|G|171F79|1|A|C|12cWW
1F79|1|A|G|171F79|1|A|G|16s55
1F79|1|A|G|171F79|1|A|G|170BPh
1F79|1|A|G|21F79|1|A|A|3s35
1F79|1|A|G|21F79|1|A|C|26cWW
1F79|1|A|G|21F79|1|A|G|1ns53
1F79|1|A|G|21F79|1|A|G|20BPh
1F79|1|A|G|211F79|1|A|C|20s53
1F79|1|A|G|211F79|1|A|C|8ncWW
1F79|1|A|G|211F79|1|A|G|210BPh
1F79|1|A|G|211F79|1|A|G|9s55
1F79|1|A|G|221F79|1|A|C|23s35
1F79|1|A|G|221F79|1|A|G|220BPh
1F79|1|A|G|221F79|1|A|U|6cWW
1F79|1|A|G|51F79|1|A|A|4ns53
1F79|1|A|G|51F79|1|A|C|23cWW
1F79|1|A|G|51F79|1|A|G|50BPh
1F79|1|A|G|51F79|1|A|U|24s55
1F79|1|A|G|51F79|1|A|U|6s35
1F79|1|A|G|91F79|1|A|C|20cWW
1F79|1|A|G|91F79|1|A|C|8s53
1F79|1|A|G|91F79|1|A|G|10s35
1F79|1|A|G|91F79|1|A|G|21s55
1F79|1|A|G|91F79|1|A|G|90BPh
1F79|1|A|U|111F79|1|A|A|18cWW
1F79|1|A|U|111F79|1|A|C|12s35
1F79|1|A|U|111F79|1|A|G|10s53
1F79|1|A|U|111F79|1|A|U|110BPh
1F79|1|A|U|131F79|1|A|C|12s53n9BP
1F79|1|A|U|131F79|1|A|G|16tSW
1F79|1|A|U|131F79|1|A|U|130BPh
1F79|1|A|U|141F79|1|A|G|16s33
1F79|1|A|U|141F79|1|A|U|140BPh
1F79|1|A|U|241F79|1|A|A|4cWW
1F79|1|A|U|241F79|1|A|C|23s53
1F79|1|A|U|241F79|1|A|G|5s55
1F79|1|A|U|241F79|1|A|U|240BPh
1F79|1|A|U|241F79|1|A|U|25ns35
1F79|1|A|U|251F79|1|A|A|3cWW
1F79|1|A|U|251F79|1|A|C|26s35
1F79|1|A|U|251F79|1|A|U|24ns53
1F79|1|A|U|251F79|1|A|U|250BPh
1F79|1|A|U|61F79|1|A|C|8s35
1F79|1|A|U|61F79|1|A|G|22cWW
1F79|1|A|U|61F79|1|A|G|5s53
1F79|1|A|U|61F79|1|A|U|6n0BP
1F79|1|A|U|61F79|1|A|U|7
1F79|1|A|U|71F79|1|A|G|59BPh


Base-PairsCount (10)Relative Frequency
cWW90.900
tWS10.100
Base-PhosphateCount (22)Relative Frequency
9BPh20.091
0BPh200.909
Base-StackingCount (11)Relative Frequency
s3310.091
s5370.636
s5530.273

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)