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NDB ID: 1F7F  PDB ID: 1F7F 

RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
1F7F|1|A|A|181F7F|1|A|A|180BPh
1F7F|1|A|A|181F7F|1|A|C|12s55
1F7F|1|A|A|181F7F|1|A|C|19s35
1F7F|1|A|A|181F7F|1|A|G|17s53
1F7F|1|A|A|181F7F|1|A|U|11cWW
1F7F|1|A|A|31F7F|1|A|A|30BPh
1F7F|1|A|A|31F7F|1|A|A|4s35
1F7F|1|A|A|31F7F|1|A|C|26ns55
1F7F|1|A|A|31F7F|1|A|G|2ns53
1F7F|1|A|A|31F7F|1|A|U|25cWW
1F7F|1|A|A|41F7F|1|A|A|3s53
1F7F|1|A|A|41F7F|1|A|A|40BPh
1F7F|1|A|A|41F7F|1|A|G|5s35
1F7F|1|A|A|41F7F|1|A|U|24cWW
1F7F|1|A|C|121F7F|1|A|A|18s55
1F7F|1|A|C|121F7F|1|A|C|12n0BP
1F7F|1|A|C|121F7F|1|A|G|16ncWH
1F7F|1|A|C|121F7F|1|A|G|17cWW
1F7F|1|A|C|121F7F|1|A|U|11ns53
1F7F|1|A|C|121F7F|1|A|U|13s35
1F7F|1|A|C|151F7F|1|A|C|15
1F7F|1|A|C|151F7F|1|A|G|16s33
1F7F|1|A|C|151F7F|1|A|U|13
1F7F|1|A|C|151F7F|1|A|U|14n9BP
1F7F|1|A|C|191F7F|1|A|A|18s53
1F7F|1|A|C|191F7F|1|A|C|190BPh
1F7F|1|A|C|191F7F|1|A|C|20s35
1F7F|1|A|C|191F7F|1|A|G|10cWW
1F7F|1|A|C|201F7F|1|A|C|19s53
1F7F|1|A|C|201F7F|1|A|C|200BPh
1F7F|1|A|C|201F7F|1|A|G|10ns55
1F7F|1|A|C|201F7F|1|A|G|21s35
1F7F|1|A|C|201F7F|1|A|G|9cWW
1F7F|1|A|C|231F7F|1|A|C|230BPh
1F7F|1|A|C|231F7F|1|A|G|22s53n9BP
1F7F|1|A|C|231F7F|1|A|G|5cWW
1F7F|1|A|C|231F7F|1|A|U|24s35
1F7F|1|A|C|261F7F|1|A|A|3ns55
1F7F|1|A|C|261F7F|1|A|C|260BPh
1F7F|1|A|C|261F7F|1|A|C|27s35
1F7F|1|A|C|261F7F|1|A|G|2cWW
1F7F|1|A|C|261F7F|1|A|U|25s53
1F7F|1|A|C|271F7F|1|A|C|26s53
1F7F|1|A|C|271F7F|1|A|G|1ncWW
1F7F|1|A|C|71F7F|1|A|C|70BPh
1F7F|1|A|C|71F7F|1|A|C|8ns35
1F7F|1|A|C|71F7F|1|A|G|22cWW
1F7F|1|A|C|71F7F|1|A|G|5
1F7F|1|A|C|81F7F|1|A|C|7ns53
1F7F|1|A|C|81F7F|1|A|C|80BPh
1F7F|1|A|C|81F7F|1|A|G|21cWW
1F7F|1|A|C|81F7F|1|A|G|9s35
1F7F|1|A|G|11F7F|1|A|C|27ncWW
1F7F|1|A|G|11F7F|1|A|G|1n0BP
1F7F|1|A|G|11F7F|1|A|G|2ns35
1F7F|1|A|G|101F7F|1|A|C|19cWW
1F7F|1|A|G|101F7F|1|A|C|20ns55
1F7F|1|A|G|101F7F|1|A|G|100BPh
1F7F|1|A|G|101F7F|1|A|G|9s53
1F7F|1|A|G|101F7F|1|A|U|11s35
1F7F|1|A|G|161F7F|1|A|C|12ncHW
1F7F|1|A|G|161F7F|1|A|C|15s33
1F7F|1|A|G|161F7F|1|A|G|161BPh
1F7F|1|A|G|161F7F|1|A|G|17s55
1F7F|1|A|G|161F7F|1|A|U|13ntWS
1F7F|1|A|G|171F7F|1|A|A|18s35
1F7F|1|A|G|171F7F|1|A|C|12cWW
1F7F|1|A|G|171F7F|1|A|G|16s55
1F7F|1|A|G|171F7F|1|A|G|170BPh
1F7F|1|A|G|21F7F|1|A|A|3ns35
1F7F|1|A|G|21F7F|1|A|C|26cWW
1F7F|1|A|G|21F7F|1|A|G|1ns53
1F7F|1|A|G|21F7F|1|A|G|20BPh
1F7F|1|A|G|211F7F|1|A|C|20s53
1F7F|1|A|G|211F7F|1|A|C|8cWW
1F7F|1|A|G|211F7F|1|A|G|210BPh
1F7F|1|A|G|211F7F|1|A|G|9s55
1F7F|1|A|G|221F7F|1|A|C|23s35
1F7F|1|A|G|221F7F|1|A|C|7cWW
1F7F|1|A|G|221F7F|1|A|G|21
1F7F|1|A|G|221F7F|1|A|G|220BPh
1F7F|1|A|G|221F7F|1|A|G|5ns33
1F7F|1|A|G|51F7F|1|A|A|4s53
1F7F|1|A|G|51F7F|1|A|C|23cWW
1F7F|1|A|G|51F7F|1|A|G|22ns33
1F7F|1|A|G|51F7F|1|A|G|50BPh
1F7F|1|A|G|51F7F|1|A|U|24s55
1F7F|1|A|G|51F7F|1|A|U|6
1F7F|1|A|G|91F7F|1|A|C|20cWW
1F7F|1|A|G|91F7F|1|A|C|8s53
1F7F|1|A|G|91F7F|1|A|G|10s35
1F7F|1|A|G|91F7F|1|A|G|21s55
1F7F|1|A|G|91F7F|1|A|G|90BPh
1F7F|1|A|U|111F7F|1|A|A|18cWW
1F7F|1|A|U|111F7F|1|A|C|12ns35
1F7F|1|A|U|111F7F|1|A|G|10s53
1F7F|1|A|U|111F7F|1|A|U|110BPh
1F7F|1|A|U|131F7F|1|A|C|12s53n9BP
1F7F|1|A|U|131F7F|1|A|G|16ntSW
1F7F|1|A|U|131F7F|1|A|U|130BPh
1F7F|1|A|U|141F7F|1|A|C|15
1F7F|1|A|U|141F7F|1|A|U|14n0BP
1F7F|1|A|U|241F7F|1|A|A|4cWW
1F7F|1|A|U|241F7F|1|A|C|23s53
1F7F|1|A|U|241F7F|1|A|G|5s55
1F7F|1|A|U|241F7F|1|A|U|240BPh
1F7F|1|A|U|241F7F|1|A|U|25s35
1F7F|1|A|U|251F7F|1|A|A|3cWW
1F7F|1|A|U|251F7F|1|A|C|26s35
1F7F|1|A|U|251F7F|1|A|U|24s53
1F7F|1|A|U|251F7F|1|A|U|250BPh
1F7F|1|A|U|61F7F|1|A|G|5
1F7F|1|A|U|61F7F|1|A|U|60BPh


Base-PairsCount (10)Relative Frequency
cWW101.000
Base-PhosphateCount (22)Relative Frequency
1BPh10.045
0BPh210.955
Base-StackingCount (9)Relative Frequency
s3310.111
s5340.444
s5540.444

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)

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