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As of 25-May-2022 number of released structures: 12098
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NDB ID: PR0031  PDB ID: 1F7V 

RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
1F7V|1|B|A|9141F7V|1|B|A|9140BPh
1F7V|1|B|A|9141F7V|1|B|A|915s35
1F7V|1|B|A|9141F7V|1|B|A|921cWS
1F7V|1|B|A|9141F7V|1|B|C|913
1F7V|1|B|A|9141F7V|1|B|C|922s55
1F7V|1|B|A|9141F7V|1|B|U|908tHW
1F7V|1|B|A|9151F7V|1|B|A|914s53
1F7V|1|B|A|9151F7V|1|B|A|9150BPh
1F7V|1|B|A|9151F7V|1|B|G|959s35
1F7V|1|B|A|9151F7V|1|B|U|948tWW
1F7V|1|B|A|9211F7V|1|B|A|914cSW
1F7V|1|B|A|9211F7V|1|B|A|9210BPh
1F7V|1|B|A|9211F7V|1|B|A|946s33
1F7V|1|B|A|9211F7V|1|B|U|908tSS
1F7V|1|B|A|9211F7V|1|B|U|948s55
1F7V|1|B|A|9371F7V|1|B|A|9370BPh
1F7V|1|B|A|9371F7V|1|B|C|932s35
1F7V|1|B|A|9371F7V|1|B|C|939s55
1F7V|1|B|A|9371F7V|1|B|G|931s53
1F7V|1|B|A|9381F7V|1|B|A|9380BPh
1F7V|1|B|A|9411F7V|1|B|A|9410BPh
1F7V|1|B|A|9411F7V|1|B|C|940ns53
1F7V|1|B|A|9411F7V|1|B|G|930s55
1F7V|1|B|A|9411F7V|1|B|G|942s35
1F7V|1|B|A|9411F7V|1|B|U|929cWW
1F7V|1|B|A|9431F7V|1|B|A|9430BPh
1F7V|1|B|A|9431F7V|1|B|A|944s35
1F7V|1|B|A|9431F7V|1|B|C|928s55
1F7V|1|B|A|9431F7V|1|B|G|942s53
1F7V|1|B|A|9441F7V|1|B|A|943s53
1F7V|1|B|A|9441F7V|1|B|A|9440BPh
1F7V|1|B|A|9441F7V|1|B|C|925
1F7V|1|B|A|9441F7V|1|B|G|945s35
1F7V|1|B|A|9461F7V|1|B|A|921s33n7BP
1F7V|1|B|A|9461F7V|1|B|C|9226BPh
1F7V|1|B|A|9511F7V|1|B|A|9510BPh
1F7V|1|B|A|9511F7V|1|B|C|950s53
1F7V|1|B|A|9511F7V|1|B|G|952s35
1F7V|1|B|A|9511F7V|1|B|G|964s55
1F7V|1|B|A|9511F7V|1|B|U|963cWW
1F7V|1|B|A|9571F7V|1|B|A|9570BPh
1F7V|1|B|A|9571F7V|1|B|C|956s53
1F7V|1|B|A|9571F7V|1|B|G|917s33
1F7V|1|B|A|9571F7V|1|B|G|918s55
1F7V|1|B|A|9711F7V|1|B|A|9710BPh
1F7V|1|B|A|9711F7V|1|B|A|972s35
1F7V|1|B|A|9711F7V|1|B|C|903s55
1F7V|1|B|A|9711F7V|1|B|G|970s53
1F7V|1|B|A|9711F7V|1|B|U|902cWW
1F7V|1|B|A|9721F7V|1|B|A|971s53
1F7V|1|B|A|9721F7V|1|B|A|9720BPh
1F7V|1|B|A|9721F7V|1|B|G|973s35
1F7V|1|B|A|9721F7V|1|B|U|902s55
1F7V|1|B|C|9031F7V|1|B|A|971s55
1F7V|1|B|C|9031F7V|1|B|C|9030BPh
1F7V|1|B|C|9031F7V|1|B|C|904s35
1F7V|1|B|C|9031F7V|1|B|G|970cWW
1F7V|1|B|C|9031F7V|1|B|U|902s53
1F7V|1|B|C|9041F7V|1|B|C|903s53
1F7V|1|B|C|9041F7V|1|B|C|9040BPh
1F7V|1|B|C|9041F7V|1|B|G|969cWW
1F7V|1|B|C|9041F7V|1|B|G|970s55
1F7V|1|B|C|9041F7V|1|B|U|905s35
1F7V|1|B|C|9061F7V|1|B|C|9060BPh
1F7V|1|B|C|9061F7V|1|B|G|907s35
1F7V|1|B|C|9061F7V|1|B|G|967cWW
1F7V|1|B|C|9061F7V|1|B|G|968s55
1F7V|1|B|C|9061F7V|1|B|U|905s53
1F7V|1|B|C|9111F7V|1|B|C|9110BPh
1F7V|1|B|C|9111F7V|1|B|C|912s35
1F7V|1|B|C|9111F7V|1|B|G|924cWW
1F7V|1|B|C|9121F7V|1|B|C|911s53
1F7V|1|B|C|9121F7V|1|B|C|9120BPh
1F7V|1|B|C|9121F7V|1|B|C|913s35
1F7V|1|B|C|9121F7V|1|B|G|923cWW
1F7V|1|B|C|9121F7V|1|B|G|924s55
1F7V|1|B|C|9131F7V|1|B|C|912s53
1F7V|1|B|C|9131F7V|1|B|C|9130BPh
1F7V|1|B|C|9131F7V|1|B|C|922
1F7V|1|B|C|9131F7V|1|B|G|923s55
1F7V|1|B|C|9131F7V|1|B|U|908s33
1F7V|1|B|C|9221F7V|1|B|A|914s55
1F7V|1|B|C|9221F7V|1|B|A|921
1F7V|1|B|C|9221F7V|1|B|C|913
1F7V|1|B|C|9221F7V|1|B|C|9220BPh
1F7V|1|B|C|9221F7V|1|B|G|923s35
1F7V|1|B|C|9251F7V|1|B|A|944
1F7V|1|B|C|9251F7V|1|B|C|9250BPh
1F7V|1|B|C|9251F7V|1|B|G|924s53
1F7V|1|B|C|9281F7V|1|B|A|943s55
1F7V|1|B|C|9281F7V|1|B|C|9280BPh
1F7V|1|B|C|9281F7V|1|B|G|942cWW
1F7V|1|B|C|9281F7V|1|B|U|929s35
1F7V|1|B|C|9321F7V|1|B|A|937s53
1F7V|1|B|C|9391F7V|1|B|A|937s55
1F7V|1|B|C|9391F7V|1|B|C|9390BPh
1F7V|1|B|C|9391F7V|1|B|C|940s35
1F7V|1|B|C|9391F7V|1|B|G|931cWW
1F7V|1|B|C|9401F7V|1|B|A|941ns35
1F7V|1|B|C|9401F7V|1|B|C|939s53
1F7V|1|B|C|9401F7V|1|B|C|9400BPh
1F7V|1|B|C|9401F7V|1|B|G|930cWW
1F7V|1|B|C|9401F7V|1|B|G|931s55
1F7V|1|B|C|9501F7V|1|B|A|951s35
1F7V|1|B|C|9501F7V|1|B|C|9500BPh
1F7V|1|B|C|9501F7V|1|B|G|964cWW
1F7V|1|B|C|9501F7V|1|B|G|965s55
1F7V|1|B|C|9561F7V|1|B|A|957s35
1F7V|1|B|C|9561F7V|1|B|C|9560BPh
1F7V|1|B|C|9561F7V|1|B|G|918cWW
1F7V|1|B|C|9611F7V|1|B|C|9610BPh
1F7V|1|B|C|9611F7V|1|B|C|962s35
1F7V|1|B|C|9611F7V|1|B|G|953cWW
1F7V|1|B|C|9611F7V|1|B|U|9608BPh
1F7V|1|B|C|9621F7V|1|B|C|961s53
1F7V|1|B|C|9621F7V|1|B|C|9620BPh
1F7V|1|B|C|9621F7V|1|B|G|952cWW
1F7V|1|B|C|9621F7V|1|B|G|953s55
1F7V|1|B|C|9621F7V|1|B|U|963s35
1F7V|1|B|C|9661F7V|1|B|C|9660BPh
1F7V|1|B|C|9661F7V|1|B|G|907cWW
1F7V|1|B|C|9661F7V|1|B|G|965s53
1F7V|1|B|C|9661F7V|1|B|G|967s35
1F7V|1|B|G|9071F7V|1|B|C|906s53
1F7V|1|B|G|9071F7V|1|B|C|966cWW
1F7V|1|B|G|9071F7V|1|B|G|9070BPh
1F7V|1|B|G|9071F7V|1|B|G|967s55
1F7V|1|B|G|9171F7V|1|B|A|957s33
1F7V|1|B|G|9181F7V|1|B|A|957s55
1F7V|1|B|G|9181F7V|1|B|C|956cWW
1F7V|1|B|G|9231F7V|1|B|C|912cWW
1F7V|1|B|G|9231F7V|1|B|C|913s55
1F7V|1|B|G|9231F7V|1|B|C|922s53
1F7V|1|B|G|9231F7V|1|B|G|923n0BP
1F7V|1|B|G|9231F7V|1|B|G|924s35
1F7V|1|B|G|9241F7V|1|B|C|911cWW
1F7V|1|B|G|9241F7V|1|B|C|912s55
1F7V|1|B|G|9241F7V|1|B|C|925s35
1F7V|1|B|G|9241F7V|1|B|G|923s53
1F7V|1|B|G|9241F7V|1|B|G|9240BPh
1F7V|1|B|G|9241F7V|1|B|G|945
1F7V|1|B|G|9301F7V|1|B|A|941s55
1F7V|1|B|G|9301F7V|1|B|C|940cWW
1F7V|1|B|G|9301F7V|1|B|G|930n0BP
1F7V|1|B|G|9301F7V|1|B|G|931s35
1F7V|1|B|G|9301F7V|1|B|U|929s53
1F7V|1|B|G|9311F7V|1|B|A|937s35
1F7V|1|B|G|9311F7V|1|B|C|939cWW
1F7V|1|B|G|9311F7V|1|B|C|940s55
1F7V|1|B|G|9311F7V|1|B|G|930s53
1F7V|1|B|G|9311F7V|1|B|G|9310BPh
1F7V|1|B|G|9361F7V|1|B|G|936n0BP
1F7V|1|B|G|9421F7V|1|B|A|941s53
1F7V|1|B|G|9421F7V|1|B|A|943s35
1F7V|1|B|G|9421F7V|1|B|C|928cWW
1F7V|1|B|G|9421F7V|1|B|G|9420BPh
1F7V|1|B|G|9421F7V|1|B|U|929s55
1F7V|1|B|G|9451F7V|1|B|A|944s53
1F7V|1|B|G|9451F7V|1|B|G|924
1F7V|1|B|G|9451F7V|1|B|G|9450BPh
1F7V|1|B|G|9521F7V|1|B|A|951s53
1F7V|1|B|G|9521F7V|1|B|C|962cWW
1F7V|1|B|G|9521F7V|1|B|G|953s35
1F7V|1|B|G|9521F7V|1|B|U|963s55
1F7V|1|B|G|9531F7V|1|B|C|961cWW
1F7V|1|B|G|9531F7V|1|B|C|962s55
1F7V|1|B|G|9531F7V|1|B|G|952s53
1F7V|1|B|G|9531F7V|1|B|G|953n0BP
1F7V|1|B|G|9591F7V|1|B|A|915s53
1F7V|1|B|G|9591F7V|1|B|G|9590BPh
1F7V|1|B|G|9591F7V|1|B|U|948s53
1F7V|1|B|G|9591F7V|1|B|U|960s35
1F7V|1|B|G|9641F7V|1|B|A|951s55
1F7V|1|B|G|9641F7V|1|B|C|950cWW
1F7V|1|B|G|9641F7V|1|B|G|9640BPh
1F7V|1|B|G|9641F7V|1|B|G|965s35
1F7V|1|B|G|9641F7V|1|B|U|963s53
1F7V|1|B|G|9651F7V|1|B|C|950s55
1F7V|1|B|G|9651F7V|1|B|C|966s35
1F7V|1|B|G|9651F7V|1|B|G|964s53
1F7V|1|B|G|9651F7V|1|B|G|9650BPh
1F7V|1|B|G|9671F7V|1|B|C|906cWW
1F7V|1|B|G|9671F7V|1|B|C|966s53
1F7V|1|B|G|9671F7V|1|B|G|907s55
1F7V|1|B|G|9671F7V|1|B|G|9670BPh
1F7V|1|B|G|9671F7V|1|B|G|968s35
1F7V|1|B|G|9681F7V|1|B|C|906s55
1F7V|1|B|G|9681F7V|1|B|G|967s53
1F7V|1|B|G|9681F7V|1|B|G|9680BPh
1F7V|1|B|G|9681F7V|1|B|G|969s35
1F7V|1|B|G|9681F7V|1|B|U|905cWW
1F7V|1|B|G|9691F7V|1|B|C|904cWW
1F7V|1|B|G|9691F7V|1|B|G|968s53
1F7V|1|B|G|9691F7V|1|B|G|9690BPh
1F7V|1|B|G|9691F7V|1|B|G|970s35
1F7V|1|B|G|9691F7V|1|B|U|905s55
1F7V|1|B|G|9701F7V|1|B|A|971s35
1F7V|1|B|G|9701F7V|1|B|C|903cWW
1F7V|1|B|G|9701F7V|1|B|C|904s55
1F7V|1|B|G|9701F7V|1|B|G|969s53
1F7V|1|B|G|9701F7V|1|B|G|9700BPh
1F7V|1|B|G|9731F7V|1|B|A|972s53
1F7V|1|B|G|9731F7V|1|B|G|9730BPh
1F7V|1|B|U|9021F7V|1|B|A|971cWW
1F7V|1|B|U|9021F7V|1|B|A|972s55
1F7V|1|B|U|9021F7V|1|B|C|903s35
1F7V|1|B|U|9021F7V|1|B|U|9020BPh
1F7V|1|B|U|9051F7V|1|B|C|904s53
1F7V|1|B|U|9051F7V|1|B|C|906s35
1F7V|1|B|U|9051F7V|1|B|G|968cWW
1F7V|1|B|U|9051F7V|1|B|G|969s55
1F7V|1|B|U|9051F7V|1|B|U|9050BPh
1F7V|1|B|U|9081F7V|1|B|A|914tWH
1F7V|1|B|U|9081F7V|1|B|A|921tSS
1F7V|1|B|U|9081F7V|1|B|C|913s33
1F7V|1|B|U|9081F7V|1|B|U|9080BPh
1F7V|1|B|U|9291F7V|1|B|A|941cWW
1F7V|1|B|U|9291F7V|1|B|C|928s53
1F7V|1|B|U|9291F7V|1|B|G|930s35
1F7V|1|B|U|9291F7V|1|B|G|942s55
1F7V|1|B|U|9291F7V|1|B|U|9290BPh
1F7V|1|B|U|9331F7V|1|B|U|9330BPh
1F7V|1|B|U|9481F7V|1|B|A|915tWW
1F7V|1|B|U|9481F7V|1|B|A|921s55
1F7V|1|B|U|9481F7V|1|B|G|959s35
1F7V|1|B|U|9481F7V|1|B|U|9480BPh
1F7V|1|B|U|9601F7V|1|B|G|9185BPh
1F7V|1|B|U|9601F7V|1|B|G|959s53n9BP
1F7V|1|B|U|9601F7V|1|B|U|9600BPh
1F7V|1|B|U|9631F7V|1|B|A|951cWW
1F7V|1|B|U|9631F7V|1|B|C|962s53
1F7V|1|B|U|9631F7V|1|B|G|952s55
1F7V|1|B|U|9631F7V|1|B|G|964s35
1F7V|1|B|U|9631F7V|1|B|U|9630BPh


Base-PairsCount (21)Relative Frequency
cWW170.810
tWW10.048
tWH10.048
cWS10.048
tSS10.048
Base-PhosphateCount (52)Relative Frequency
5BPh10.019
6BPh10.019
8BPh10.019
0BPh490.942
Base-StackingCount (35)Relative Frequency
s3330.086
s53120.343
s55200.571

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)

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